PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P03630_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 211aa MW: 23813.1 Da PI: 9.187 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.4 | 1.8e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA ELSvLCdae+ +iifs +gklye++s GSMUA_Achr1P03630_001 9 KRIENATSRQVTFSKRRNGLLKKALELSVLCDAEIGLIIFSARGKLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 52.8 | 1.7e-18 | 79 | 168 | 8 | 99 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 s + e++++ ++qe+a L +ie L+ ++R++lGe+Les s++eL +Le +Le+sl+kiR kK + e++ +lq+ke+ l een+ L GSMUA_Achr1P03630_001 79 SsAIEHENQPSRQEAASLFTKIEHLEASKRKILGENLESSSIEELGELEIKLEQSLRKIRGKKAK---EELVQLQQKENTLAEENTLL 163 2366778899*****************************************************86...99****************** PP K-box 95 rkkle 99 r+kl+ GSMUA_Achr1P03630_001 164 REKLQ 168 **987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.4E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.314 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.63E-32 | 3 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.47E-40 | 3 | 82 | No hit | No description |
PRINTS | PR00404 | 2.3E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.7E-18 | 83 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.942 | 86 | 173 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MVRGKTQLKR IENATSRQVT FSKRRNGLLK KALELSVLCD AEIGLIIFSA RGKLYEFASS 60 SMRDTIERYQ AHAKQCNSSS AIEHENQPSR QEAASLFTKI EHLEASKRKI LGENLESSSI 120 EELGELEIKL EQSLRKIRGK KAKEELVQLQ QKENTLAEEN TLLREKLQHK LPSAASKEVV 180 PYDISGEYAE VETELCIGCP GRGRRSGTLQ R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 1e-19 | 3 | 72 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_B | 1e-19 | 3 | 72 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_C | 1e-19 | 3 | 72 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_D | 1e-19 | 3 | 72 | 2 | 71 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389854.1 | 1e-146 | PREDICTED: MADS-box protein SOC1-like | ||||
Swissprot | Q9XJ60 | 2e-67 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | M0RWS1 | 1e-149 | M0RWS1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P03630_001 | 1e-150 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1413 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 9e-54 | AGAMOUS-like 20 |