PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P02520_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 242aa MW: 24943.3 Da PI: 7.4716 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.9 | 2.3e-40 | 39 | 139 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC ++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ GSMUA_Achr1P02520_001 39 PCGACKFLRRKCMAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPAHKRLDAAVTICYEAQARLRDPVYGCVAHIFALQQQV 126 7***********************9989************************************************************ PP DUF260 88 eqlkaelallkee 100 +l+ael++l+++ GSMUA_Achr1P02520_001 127 VNLQAELSYLQAH 139 ********99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.093 | 38 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.0E-39 | 39 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSGNPSPSIE GATGGGSGGA GGGGGTSGGG GSAGGGSGPC GACKFLRRKC MAGCIFAPYF 60 DSEQGAAHFA AVHKVFGASN VSKLLLHIPA HKRLDAAVTI CYEAQARLRD PVYGCVAHIF 120 ALQQQVVNLQ AELSYLQAHL ATLELPSPPP PLPPPLVVAP IPFAISDLPS AANLPTAVDL 180 STLFNPLVQP AWTLQQQQQQ LSTSTRSPCE RSGFGGGDLQ ALARELLDRH RMATSEPPPD 240 SR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-36 | 35 | 140 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-36 | 35 | 140 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 31 | SGGAGGGGGTSGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009391108.1 | 1e-175 | PREDICTED: LOB domain-containing protein 18-like | ||||
Swissprot | O81323 | 3e-74 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | M0RWG0 | 1e-174 | M0RWG0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P02520_001 | 1e-174 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3346 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 1e-69 | LBD family protein |
Publications ? help Back to Top | |||
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