PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P16200_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

ERF

Protein Properties

Length: 190aa MW: 20666.8 Da PI: 5.8863

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P16200_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.1	2.6e-19	82	132	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + + r++lg++ ta eAa+a+++a+ +++g GSMUA_Achr11P16200_001 82 RYRGVRQRP-WGKFAAEIRDP---NrRGSRIWLGTYSTALEAARAYDRAAFRMRG 132 7******.******9...4334***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.4E-14	82	132	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-31	82	141	IPR001471	AP2/ERF domain
CDD	cd00018	2.40E-27	82	141	No hit	No description
PROSITE profile	PS51032	24.052	82	140	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.75E-22	82	141	IPR016177	DNA-binding domain
SMART	SM00380	1.7E-36	82	146	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-13	83	94	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-13	122	142	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MEHHLGVDDS STLDFFPHQL HAADFESLLA DLPPSSTPPP LHYAAVEPTL SMPLPPAPFA 60 ESWPRESAGV SSEAEDQAVG RRYRGVRQRP WGKFAAEIRD PNRRGSRIWL GTYSTALEAA 120 RAYDRAAFRM RGCRAILNFP NEVGRSEHRH PPVTDNEVGV GRDGGGEDGE SSGAAGIEGG 180 RRPEGNPFAV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	8e-29	78	147	1	70	ATERF1
3gcc_A	8e-29	78	147	1	70	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009383947.1	1e-136	PREDICTED: ethylene-responsive transcription factor 5-like
Swissprot	O80341	1e-32	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	M0RSQ0	1e-135	M0RSQ0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P16200_001	1e-135	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	5e-23	ethylene responsive element binding factor 5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]