PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P22310_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 459aa    MW: 50648.8 Da    PI: 6.3672
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P22310_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-13301347455
                             HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                             +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  GSMUA_Achr10P22310_001 301 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 347
                             799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-4947233IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-19300364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.88E-15300351No hitNo description
PfamPF000102.4E-10301347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-18301360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-16303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MSDLFWSEEE RGMAAAVLGP VAFDYLAASR TSSDGLTAAA SSAEADLQSR LLDLVEGPPD  60
RPCLGWNYAI FWQISRAKSG DLVLGWGDGS CRDLRDGEEA AAAAAVARSP GDDESQQKMR  120
RAVLQKLHVY FGGSDEDNYA LRLDQVTDAE MFFLVSMYFS FPRGKGAPGR ALAAGKHLWI  180
LSPSDYCYRG FLAASAGFRT IVVVPFDTGV LELGSVRSLA ESPNSLQTIK SVFSEDSSWD  240
TQLKRGSGDW KNQHNPQQSL QPPPRQIDFS GGTSRAGTLI AHRRPRKRGR KPANGREEPL  300
NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI AYITELQKRL KEMESERERF  360
LESNAMDHST RVHQPEVDVQ ALEDEVIVQV SSPLNTHPVS KVFQALKEVQ VNVAESKVTG  420
GGETIQHTFI IKSPGSEQQI KDKIIAALSH GSDSTEQLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-29295357264Transcription factor MYC2
5gnj_B2e-29295357264Transcription factor MYC2
5gnj_E2e-29295357264Transcription factor MYC2
5gnj_F2e-29295357264Transcription factor MYC2
5gnj_G2e-29295357264Transcription factor MYC2
5gnj_I2e-29295357264Transcription factor MYC2
5gnj_M2e-29295357264Transcription factor MYC2
5gnj_N2e-29295357264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282290RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018675535.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like
RefseqXP_018675536.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like
RefseqXP_018675537.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like
TrEMBLM0RKF60.0M0RKF6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P22310_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-103bHLH family protein