PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00151152001
Common NameGSBRNA2T00151152001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 457aa    MW: 51136.8 Da    PI: 6.5232
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00151152001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-12309355455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  GSBRNA2T00151152001 309 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 355
                          799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-4256232IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.234305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-18305371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.96E-14308359No hitNo description
PfamPF000104.0E-10309355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-17309371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MNVTGESMVG QKFWESQEDR AMVESAIGTE ACDFFISSNT SLPKLLPPPP PTDPNLQQGL  60
RHVVEGSDWD YAVFWLASNV NSSDGCVLIW GDGYYRATQK GNSSDKEEDE TKRRVLRKLH  120
LSFTGSDEDH RLMKSGGLLS DLDMFYLASL YFYFRCDSTK YGPAGTYVSG KPLWAADLPS  180
CLSYYRVRSF LARSAGFKTV LSVPVNCGVV ELGSLKLIPE DKSVVEMVKS VFGGSDFVQA  240
PKIFGRQLSK PRSMSINFSP KMEDESGFSL DAYEVGGSNQ VEAALYLTDE QKPRKRGRKP  300
ANGREEALNH VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLADAITY ITDMQKKIRV  360
YETEKQVMKR RESSQITPGD VDYQQRHDDA VVRVSCPLET HPVSKVVQMF RENEVTPHDT  420
NVAVTEEGVV HTFTVRPQSG CTAEELKDKL LASLSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-26303369268Transcription factor MYC2
5gnj_B4e-26303369268Transcription factor MYC2
5gnj_E4e-26303369268Transcription factor MYC2
5gnj_F4e-26303369268Transcription factor MYC2
5gnj_G4e-26303369268Transcription factor MYC2
5gnj_I4e-26303369268Transcription factor MYC2
5gnj_M4e-26303369268Transcription factor MYC2
5gnj_N4e-26303369268Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.36250.0bud| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00151152001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896320.0AC189632.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003O10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013737368.10.0transcription factor bHLH3-like
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A398AAI30.0A0A398AAI3_BRACM; Uncharacterized protein
STRINGBra012720.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]