PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00151041001
Common NameGSBRNA2T00151041001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 287aa    MW: 32888.1 Da    PI: 7.3322
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00151041001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.7e-5281371128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeel+ +yL +kveg ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rdkky++g+r+nratk+gyWkatgk
  GSBRNA2T00151041001   8 LPPGFRFHPTDEELIGYYLSRKVEGLEIEL-EVIPVIDLYKFDPWELPdKsFLPNRDMEWFFFCPRDKKYPNGSRTNRATKAGYWKATGK 96 
                          79****************************.99**************96435556888******************************** PP

                  NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+++ +k +g+ +g +ktLvfy+grap g +t W+mheyrl
  GSBRNA2T00151041001  97 DRKISCKsSGAIIGYRKTLVFYEGRAPLGDRTIWFMHEYRL 137
                          *****9977888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-603161IPR003441NAC domain
PROSITE profilePS5100558.7928161IPR003441NAC domain
PfamPF023652.0E-289137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MQMGSSCLPP GFRFHPTDEE LIGYYLSRKV EGLEIELEVI PVIDLYKFDP WELPDKSFLP  60
NRDMEWFFFC PRDKKYPNGS RTNRATKAGY WKATGKDRKI SCKSSGAIIG YRKTLVFYEG  120
RAPLGDRTIW FMHEYRLCDD DLSQKSPNFK GAFVLCRVVK KNGLKTKTLK NKNEQAIGSG  180
CSSLATSPCR DQTTQFQSFK PSLTTNESSS IWISPDFILD SSKDYPQIQE GVSEYLPNYH  240
FPVNGANHQM EIAETSYLNI DQSKQTGYWP NFEYDQTGSF DYSNLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-51816217166NO APICAL MERISTEM PROTEIN
1ut4_B1e-51816217166NO APICAL MERISTEM PROTEIN
1ut7_A1e-51816217166NO APICAL MERISTEM PROTEIN
1ut7_B1e-51816217166NO APICAL MERISTEM PROTEIN
4dul_A1e-51816217166NAC domain-containing protein 19
4dul_B1e-51816217166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00151041001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136888.10.0PREDICTED: NAC domain-containing protein 86
RefseqXP_013741320.10.0NAC domain-containing protein 71-like
SwissprotO496971e-151NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A3P6ACQ50.0A0A3P6ACQ5_BRACM; Uncharacterized protein
STRINGBra012626.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-150NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  4. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]