PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134896001
Common NameGSBRNA2T00134896001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 313aa    MW: 35858.5 Da    PI: 9.409
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134896001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-17371161699
                          EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           v+p  f+ ++ ++k  + ++ l de gr W+v+ + + + g +v++kGW++F++++ L+ gDf+vF++dg s+f   vk+f+k
  GSBRNA2T00134896001  37 SVIPPAFV-NI-LEKLLPNQVGLLDEIGRLWKVETKTEEGVGDVVFKKGWEKFANDHSLEFGDFLVFSYDGVSRF--SVKIFDK 116
                          38999999.44.55678889***************99999999***************************99999..*****98 PP
2B335.51.8e-112122951598
                          -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE- CS
                   B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfr 98 
                          ++ +p +f++++g++ ee  +  l de+g++W +k+ +  +++r+   + W +F+++++L +   ++F+++  ++ ++ + +v++fr
  GSBRNA2T00134896001 212 QMEIPTTFLKSNGIEMEE--DFELCDENGKKWPMKVVIHDRGQRF-SPGLWLSFCRSHKLSTSNKCLFEFIvrSDgTCNQVLVRIFR 295
                          689*********998777..57777***********776666665.5668*******************773244455566666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-2012119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-1916119IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-1017117IPR003340B3 DNA binding domain
CDDcd100176.39E-1717115No hitNo description
PROSITE profilePS5086313.84622117IPR003340B3 DNA binding domain
PfamPF023621.0E-1538117IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-16195292IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-16195295IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.912198297IPR003340B3 DNA binding domain
CDDcd100178.04E-10200295No hitNo description
SMARTSM010191.2E-7202297IPR003340B3 DNA binding domain
PfamPF023625.5E-10212295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVERSEKGSY ARKDMEFFKV YLPEFSSRKL ACSSLISVIP PAFVNILEKL LPNQVGLLDE  60
IGRLWKVETK TEEGVGDVVF KKGWEKFAND HSLEFGDFLV FSYDGVSRFS VKIFDKNGCK  120
KYLVAVTTAD RSRVAVEKEP VHVKPVHDIS TKRCGKSRKR VSVKEEPSGN RVIHPCEMGC  180
VPENKKHKGF EEPVYKPKNP HFVRNITNCF RQMEIPTTFL KSNGIEMEED FELCDENGKK  240
WPMKVVIHDR GQRFSPGLWL SFCRSHKLST SNKCLFEFIV RSDGTCNQVL VRIFRGRMLN  300
TVTINSYQVL AM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.99820.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134896001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659243.20.0putative B3 domain-containing protein At5g66980 isoform X1
SwissprotQ9FGD21e-109Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLA0A0D3E2J70.0A0A0D3E2J7_BRAOL; Uncharacterized protein
STRINGBo9g020470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-111B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]