PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00128453001

Common Name

GSBRNA2T00128453001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 387aa MW: 42328.4 Da PI: 9.5383

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00128453001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.9	2.6e-18	19	108	2	72
trihelix 2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt +e+++Liea++ ++er r++ ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r GSBRNA2T00128453001 19 WTLNETMVLIEAKKMDDERRMRRSiglpapeqsqdsrsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERGRL 108 ************666666665445556666666666777669999*************************************9974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.713	11	94	IPR017877	Myb-like domain
Pfam	PF13837	8.8E-14	18	109	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MADQSGGLGL MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEQ SQDSRSSSGN 60 KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERGRLES SFASGSSSSA 120 AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFNVVESKT HPSSTAATAI TAAVAAAAAE 180 TGSGNGSGGG LHIPKVIQQQ GLGFVPQHQM IQPPVLLPLP RPPPPPSQPL QPRPLLLPPP 240 PQPSFHAQPI LPTKDSSSDS DTNEHSDTSP AKRRRTMPTT AAGTSGGGGG GNAEMEEGES 300 VVAAALSRSA SVIANAIRES EERQDRRHKE VMSLKERRLK IEETNVEMNR EGMSGLVEAI 360 NKLANSMFAL ASSTSRHNNQ HQGGPS*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MADQSGGLGL MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEQ SQDSRSSSGN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERGRLES SFASGSSSSA  120
AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFNVVESKT HPSSTAATAI TAAVAAAAAE  180
TGSGNGSGGG LHIPKVIQQQ GLGFVPQHQM IQPPVLLPLP RPPPPPSQPL QPRPLLLPPP  240
PQPSFHAQPI LPTKDSSSDS DTNEHSDTSP AKRRRTMPTT AAGTSGGGGG GNAEMEEGES  300
VVAAALSRSA SVIANAIRES EERQDRRHKE VMSLKERRLK IEETNVEMNR EGMSGLVEAI  360
NKLANSMFAL ASSTSRHNNQ HQGGPS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00128453001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009102667.1	0.0	PREDICTED: uncharacterized protein LOC103828785 isoform X1
Refseq	XP_013653078.1	0.0	uncharacterized protein BNAA07G06920D isoform X1
TrEMBL	A0A3P6B8R9	0.0	A0A3P6B8R9_BRACM; Uncharacterized protein
TrEMBL	M4DEI5	0.0	M4DEI5_BRARP; Uncharacterized protein
STRING	Bra014906.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	1e-135	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	106357905

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]