PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00114910001
Common NameGSBRNA2T00114910001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 260aa    MW: 28298.7 Da    PI: 7.3157
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00114910001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.46.9e-091958340
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htvv 40
                         +r C+ +++  +  fC+ ++ +lC +C  ++H+   H++v
  GSBRNA2T00114910001 19 ARSCDACKSASAAVFCRVDSAFLCITCDASIHSFtrHERV 58
                         578*****************************65779875 PP
2zf-B_box27.18.4e-0960103542
             zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                          +C+ +e+ ++   C+ +   lC +C + +H+       H++vp+
  GSBRNA2T00114910001  60 VCEVCEQAPAAVTCKADAASLCVTCDSDIHSAnplasrHERVPV 103
                          7*****************************66999999999986 PP
3CCT70.63.8e-24191234144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++
  GSBRNA2T00114910001 191 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 234
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.1E-71760IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8081760IPR000315B-box-type zinc finger
PfamPF006433.1E-72058IPR000315B-box-type zinc finger
CDDcd000211.78E-82058No hitNo description
PROSITE profilePS5011910.76556103IPR000315B-box-type zinc finger
PfamPF006431.4E-660103IPR000315B-box-type zinc finger
CDDcd000214.38E-860103No hitNo description
SMARTSM003365.9E-1061103IPR000315B-box-type zinc finger
PROSITE profilePS5101716.817191233IPR010402CCT domain
PfamPF062033.4E-18191233IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGFGLESIKP LSGGWGAAAR SCDACKSASA AVFCRVDSAF LCITCDASIH SFTRHERVYV  60
CEVCEQAPAA VTCKADAASL CVTCDSDIHS ANPLASRHER VPVESFFDAA VAKISPSTFG  120
VLGDSTTVDL TASSEFMFSD FDRLIDFDHS VSTSSLEYGV VPDGTTSVPF NRSTITTSTA  180
TTGERPSSMD REARVLRYRE KRKNRKFEKT IRYASRKAYA ESRPRIKGRF AKRTETENDD  240
VFFSQVYASA GQYGVVPTF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.135460.0flower| leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00114910001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894791e-130AC189479.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB081M20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621617.11e-159PREDICTED: zinc finger protein CONSTANS-LIKE 5
RefseqXP_013736540.11e-159zinc finger protein CONSTANS-LIKE 5-like
SwissprotQ9FHH81e-129COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A398AEJ71e-155A0A398AEJ7_BRACM; Uncharacterized protein
STRINGBra020425.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-126CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]