PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00113874001
Common NameGSBRNA2T00113874001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 365aa    MW: 40396.2 Da    PI: 8.4766
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00113874001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.39.9e-1919101273
             trihelix   2 WtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                          Wt +e+++Liea++ ++er  r++            ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r +
  GSBRNA2T00113874001  19 WTLNETMVLIEAKKMDDERRMRRSiglpaaehgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 101
                          *************9777777765444555555555999*****************************************9843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0851186IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.4E-41388IPR009057Homeodomain-like
PfamPF138371.4E-1318101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MADKSGGLAM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAAEH GNKPAELRWK  60
WIEDYCWRKG CMRSQNQCND KWDNLMRDYK KVREYERRRV ESSFAAESSS SAAAETGTYW  120
TMEKSERKER NLPSNMSPQT YQALFDVVES KTHPSSTAAT NVTAAVAAAA ASGNGSGGLG  180
FVQKHQMIQP HVLLPLHPPP PPPLPPSQAL QPRPLLLSPP PPPSFHAQPI LPTKDTSSDS  240
DTSEHPDTSP AKRRRTIPTT TDGPSGATRG NSETEEGETV VAAAFSRSAS VIANAIRESE  300
ERQDRRHKEV MSLEERRLMI EESNVQINRE GMNGLVEAIN KLASSIFAFA SSSHHNNQHQ  360
GGPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00113874001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894440.0AC189444.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070J23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584442.10.0PREDICTED: uncharacterized protein LOC106293323 isoform X1
TrEMBLA0A3P6F9Q40.0A0A3P6F9Q4_BRAOL; Uncharacterized protein
STRINGBo5g065920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.19e-66Trihelix family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]