PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00113639001
Common NameGSBRNA2T00113639001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 282aa    MW: 32342.1 Da    PI: 8.4278
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00113639001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.92.6e-4681343128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                          pGfrFhPt+eel+++yLk+ v g+  ++ evi  ++iy+++PwdLp+  + +e+ewyfF++r++k+ +g r++r+t++gyWkatg+d+++
  GSBRNA2T00113639001   8 PGFRFHPTEEELLNYYLKNMVYGNISKV-EVIGFLNIYRHDPWDLPHLSTIGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKI 96 
                          9***********************9999.99***************7777799************************************* PP

                  NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +s    ++ +glkktLvfy+grap g+ktdWvm+e+r+
  GSBRNA2T00113639001  97 ISLsePKRMIGLKKTLVFYSGRAPGGSKTDWVMNEFRM 134
                          997556777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.0136152IPR003441NAC domain
SuperFamilySSF1019416.41E-547152IPR003441NAC domain
PfamPF023653.8E-258134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSKEIELPGF RFHPTEEELL NYYLKNMVYG NISKVEVIGF LNIYRHDPWD LPHLSTIGER  60
EWYFFVPRER KHGNGGRPSR TTEKGYWKAT GSDRKIISLS EPKRMIGLKK TLVFYSGRAP  120
GGSKTDWVMN EFRMPDNCTL PKDVVLCKVY RKATSLKVLE QRAEMGAKMN QTCPNSPLSS  180
SDTISFVGKE EDMMMTSFPF PQEAAMKEAN NNNFMLQGHT EEKQRETEMK EPSSSLKLPY  240
GVLPLAELQL PKQGFEWGQD QFLSISPWLQ NLTPIVNLLN F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-45815522171NAC domain-containing protein 19
3swm_B6e-45815522171NAC domain-containing protein 19
3swm_C6e-45815522171NAC domain-containing protein 19
3swm_D6e-45815522171NAC domain-containing protein 19
3swp_A6e-45815522171NAC domain-containing protein 19
3swp_B6e-45815522171NAC domain-containing protein 19
3swp_C6e-45815522171NAC domain-containing protein 19
3swp_D6e-45815522171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.264860.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00113639001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533070.0AK353307.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-I17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013736796.10.0NAC domain-containing protein 35-like
SwissprotQ10S655e-84NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A398A4C40.0A0A398A4C4_BRACM; Uncharacterized protein
TrEMBLM4D9740.0M4D974_BRARP; Uncharacterized protein
STRINGBra013034.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38992860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-170NAC domain containing protein 36
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]