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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSBRNA2T00108468001 |
Common Name | GSBRNA2T00108468001, LOC106399445, LOC106399448 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
Dof |
Protein Properties |
Length: 174aa MW: 19126.7 Da PI: 9.5699 |
Description |
Dof family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00108468001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-Dof | 124.2 | 4.2e-39 | 57 | 115 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvPvG+grrk k
GSBRNA2T00108468001 57 PDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKP 115
68999***************************************************985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 174 aa
Download sequence Send
to blast |
MASQNSQGIK LFGKTITFNA NNLTNTIKKE EQQQQPEIQT KSAVGSPSSD LTAEKRPDKI 60 IACPRCKSME TKFCYFNNYN VNQPRHFCKG CQRYWTAGGA LRNVPVGAGR RKAKPPGRVG 120 GFEELLGAAT ATVDQVELDA LLVEEWRAAA SHGGFRHDFP AKRLRCYTDG QSC*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation. Not involved in direct flowering time regulation. {ECO:0000269|PubMed:19619493}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By red or far-red light. Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269|PubMed:19619493}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC021043 | 1e-158 | AC021043.4 Arabidopsis thaliana chromosome I BAC F28N24 genomic sequence, complete sequence. |
GenBank | BT029990 | 1e-158 | BT029990.1 Arabidopsis thaliana At1g29160 mRNA, complete cds. |
GenBank | CP002684 | 1e-158 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |