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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GSBRNA2T00105654001 |
| Common Name | GSBRNA2T00105654001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
GeBP |
| Protein Properties |
Length: 309aa MW: 35207.7 Da PI: 9.8277 |
| Description |
GeBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSBRNA2T00105654001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF573 | 74.7 | 1.7e-23 | 40 | 126 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvk.ksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91
++r+w+eeDe+++L+Gl+d++a++g +p +++ +fy+f+ +si k+sk+q+++Kir+LK K ++k +++++++f l
GSBRNA2T00105654001 40 SSRIWNEEDELTVLKGLVDYQAQKGIEPRSNWADFYRFLGgGSITGKFSKEQVLSKIRKLKAKLIASMQK---------GNTSQSEAFLL 120
78************************************96369***************************.........45566789999 PP
DUF573 92 skkiWg 97
sk+iWg
GSBRNA2T00105654001 121 SKRIWG 126
999997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MVNTSPPSHI LRSRKSKSPG KHASKPSPPE PEHVTKKNSS SRIWNEEDEL TVLKGLVDYQ 60
AQKGIEPRSN WADFYRFLGG GSITGKFSKE QVLSKIRKLK AKLIASMQKG NTSQSEAFLL 120
SKRIWGLQNE SDQSANHAKS DEEMANHEPS NNEVTKADND ESSWAVRDAF ETMVSKGLSD 180
YQKKLQLEKL MNLGSGKRRE LSDEWNELCA EEVQLNIKRL KFSAMLAEAA KCDSVSYCLE 240
SQQKNKSQPP SSSSPKRKHE DDENVSYTEA IVRRRKQQKK YLIWNMKDVL LILKRGFRYN 300
SDWDIFYG*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 255 | 275 | KRKHEDDENVSYTEAIVRRRK |
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Bna.4572 | 0.0 | flower| leaf| microspore| microspore-derived embryo| seed |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia (PubMed:12535344, PubMed:18162594). Not detected in emerging or mature leaves (PubMed:12535344). Detected in the vascular tissues of cotyledons and leaves, in hydathodes and at the base of flowers and siliques, but not in roots (PubMed:18162594). {ECO:0000269|PubMed:12535344, ECO:0000269|PubMed:18162594}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | DNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). May play a role in plant defense (PubMed:29192025). {ECO:0000269|PubMed:12535344, ECO:0000269|PubMed:21875893, ECO:0000269|PubMed:29192025, ECO:0000305|PubMed:18162594}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by KNAT1. Not regulated by gibberellins. {ECO:0000269|PubMed:12535344}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AL163817 | 6e-32 | AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project). |
| GenBank | CP002688 | 6e-32 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT4G00270.1 | 5e-54 | DNA-binding storekeeper protein-related transcriptional regulator |
