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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00104568001 | ||||||||
Common Name | GSBRNA2T00104568001, LOC106411922 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 280aa MW: 31964.6 Da PI: 6.793 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.3e-19 | 135 | 185 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++ + kl+g+ GSBRNA2T00104568001 135 LYRGVRQRQ-WGKWVAEIRKPKS---RARLWLGTFDTAEEAAMAYDRQAFKLRGH 185 59****999.**********954...4**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.83E-34 | 134 | 194 | No hit | No description |
PROSITE profile | PS51032 | 23.644 | 135 | 192 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-23 | 135 | 193 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.0E-37 | 135 | 198 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-32 | 135 | 194 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-13 | 136 | 185 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 136 | 147 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 158 | 174 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MDFDEELNLC TTKGKNIDPS CGEGSSTTSP RSMKKMRNLD HRPKPYFSFS SSSSSNSLGA 60 FPFHLDPTFQ NQQLGYVPVN QQHDQKQMIS FSPQQPQQQY MFKYWSDTLN LSPRGRRMMM 120 MNQESIVQPY SATKLYRGVR QRQWGKWVAE IRKPKSRARL WLGTFDTAEE AAMAYDRQAF 180 KLRGHNATLN FPEHYVNTEV EVHDSSSLDQ KQTQTQQPNE VNLENKEVAV SDGGLEEGMA 240 EAWFNAVRAG WGPESPLWDD LDSSQFSQSS SSCPMKPFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-22 | 134 | 192 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 43 | KKMRNLDHRPK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.21116 | 0.0 | flower| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00104568001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603866.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF054-like | ||||
Refseq | XP_013708236.1 | 0.0 | ethylene-responsive transcription factor ERF054 | ||||
Swissprot | Q9M0J3 | 1e-138 | ERF54_ARATH; Ethylene-responsive transcription factor ERF054 | ||||
TrEMBL | A0A0D3DN92 | 0.0 | A0A0D3DN92_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g054130.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2141 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28140.1 | 1e-134 | ERF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106411922 |
Publications ? help Back to Top | |||
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