PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00100083001
Common NameGSBRNA2T00100083001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WOX
Protein Properties Length: 262aa    MW: 29076.2 Da    PI: 5.0318
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00100083001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.7e-2093153257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          r+R+t+t+ ql++Le+ F +   +ps++++++++++l    ++ e++V++WFqNrRa+ k+
  GSBRNA2T00100083001  93 RQRWTPTPVQLQILERIFDQgIGTPSKQKIKDITEELsqhgQIAEQNVYNWFQNRRARSKR 153
                          89*****************99**************************************97 PP
2Wus_type_Homeobox103.31.6e-3393155365
    Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          r+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i ++NV++WFQNr+aR+++kq
  GSBRNA2T00100083001  93 RQRWTPTPVQLQILERIFDQGIGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRKQ 155
                          79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1787155IPR009057Homeodomain-like
PROSITE profilePS5007114.07489154IPR001356Homeobox domain
SMARTSM003893.3E-1391158IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-1591156IPR009057Homeodomain-like
PfamPF000461.3E-1793153IPR001356Homeobox domain
CDDcd000866.88E-1293155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MMEWDNQQQP SNNPSSNLQG IDVNGGSGSG GMYVKVMTDE QLETLRKQIA IYATICERLV  60
EMHKTLTSQQ DLAGRVGGLY ADPTFGHKMT GGRQRWTPTP VQLQILERIF DQGIGTPSKQ  120
KIKDITEELS QHGQIAEQNV YNWFQNRRAR SKRKQHGGGG VGSSSNNNNG ESEVEAETET  180
VNEKRKMPES LLVFPDGNKN AIGTTSATSP RPEDLYFQSP EMSSDLDLLG VLSNPRDEHF  240
VGKMGLSESY NMYDHVEDYG M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146154RRARSKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.226020.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00100083001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595483.10.0PREDICTED: WUSCHEL-related homeobox 13-like
SwissprotO817881e-133WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A0D3DHV00.0A0A0D3DHV0_BRAOL; Uncharacterized protein
STRINGBo7g117480.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46202851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-126WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]