PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00084403001
Common NameGSBRNA2T00084403001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 251aa    MW: 27738.3 Da    PI: 9.0047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00084403001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.5e-2177126255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  GSBRNA2T00084403001  77 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAFKLRG 126
                          59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-3376136No hitNo description
SMARTSM003801.8E-3977140IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2377135IPR016177DNA-binding domain
PROSITE profilePS5103223.48577134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-3377135IPR001471AP2/ERF domain
PRINTSPR003671.9E-117889IPR001471AP2/ERF domain
PfamPF008479.3E-1578126IPR001471AP2/ERF domain
PRINTSPR003671.9E-11100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEAAMNMYSS RTVHQSDSFG GGELMEALVP FIKSVSTSSS SPPATASAFI NSAAPKPLLM  60
KQTGVAGSCF LAKPTKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA EEAALAYDKA  120
AFKLRGDHAR LNFPHLRHNG SHIGGEFGEY KPLHSTVDAK LEAICQSMAE TQKEDKTAKA  180
SKKRASKVKK TEKVDLSEKV SPVTEFVESA GSSPLSELTF ADTEEQSRWN ETFSLEKYPS  240
YEIDWDSILS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2176139467ATERF1
3gcc_A1e-2176139467ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00084403001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529451e-116AK352945.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-I08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013702273.11e-159ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E41e-114RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A078FNF60.0A0A078FNF6_BRANA; BnaC02g24770D protein
STRINGBra008343.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-95related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  5. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  6. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]