PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00080256001

Common Name

GSBRNA2T00080256001, LOC106395235

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 293aa MW: 33682.9 Da PI: 8.421

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00080256001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.4	9.7e-52	8	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtd+el+ +yL +k+eg ++el evi+ +d+yk++Pw+Lp k + +++ ew+fF++rdkky++g r+nratk+gyWk tgk GSBRNA2T00080256001 8 LPPGFRFHPTDQELIGYYLSRKIEGLEIEL-EVIPVIDLYKFDPWELPdKsFLPNRDMEWFFFCPRDKKYPNGFRTNRATKAGYWKPTGK 96 79**************************.99**********96435556888**************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++++ +g +g +ktLvfy+grap ge+t+W+mheyrl GSBRNA2T00080256001 97 DRKITCRsSGVITGYRKTLVFYEGRAPLGERTNWFMHEYRL 137 *99677779************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-60	3	161	IPR003441	NAC domain
PROSITE profile	PS51005	57.874	8	161	IPR003441	NAC domain
Pfam	PF02365	2.8E-28	9	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MQMGSSSLPP GFRFHPTDQE LIGYYLSRKI EGLEIELEVI PVIDLYKFDP WELPDKSFLP 60 NRDMEWFFFC PRDKKYPNGF RTNRATKAGY WKPTGKDRKI TCRSSGVITG YRKTLVFYEG 120 RAPLGERTNW FMHEYRLNHD DLSQKSPKFK GAFALCRVVK KNQLKTKTLK NKEEQAVGSG 180 CSSLATSPCR DGTLQFQSFN PSSSTTNKSS SMWISPDFIL DSSKDYPQIQ EVASEYFPKF 240 HFPVNAANHH VGLRESSSYL NVDQDIDQSM QTGYWPDYEY DQTGSFGYSN LF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-49	7	162	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-49	7	162	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-49	7	162	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-49	7	162	16	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-49	7	162	19	169	NAC domain-containing protein 19
3swm_B	1e-49	7	162	19	169	NAC domain-containing protein 19
3swm_C	1e-49	7	162	19	169	NAC domain-containing protein 19
3swm_D	1e-49	7	162	19	169	NAC domain-containing protein 19
3swp_A	1e-49	7	162	19	169	NAC domain-containing protein 19
3swp_B	1e-49	7	162	19	169	NAC domain-containing protein 19
3swp_C	1e-49	7	162	19	169	NAC domain-containing protein 19
3swp_D	1e-49	7	162	19	169	NAC domain-containing protein 19
4dul_A	1e-49	7	162	16	166	NAC domain-containing protein 19
4dul_B	1e-49	7	162	16	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00080256001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013691201.1	0.0	NAC domain-containing protein 71
Refseq	XP_022550298.1	0.0	NAC domain-containing protein 71-like
Swissprot	O49697	1e-146	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A078I5U5	0.0	A0A078I5U5_BRANA; BnaC01g10510D protein
STRING	Bo1g019130.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2151	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-131	NAC domain containing protein 71

Link Out ? help Back to Top
Entrez Gene	106395235

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]