PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075596001
Common NameGSBRNA2T00075596001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 297aa    MW: 33775.8 Da    PI: 8.7228
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075596001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM271.3e-08122214194
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWka 85 
                          lp+G++F+P+d e++++ L+k+   + l+ + + +e+    +    L      ++  +  F+++ k+y+t +rk+r+++     +  W++
  GSBRNA2T00075596001 122 LPRGVKFDPSDPEIICHLLAKSGL-SGLSSHPFTNELISAALRTMGLF-----NTVCVPLFHRTIKTYNTRTRKRRKIHyddfgDVSWHK 205
                          799************777766644.44344233444333344444443.....2335579****************86655655889*** PP

                  NAM  86 tgkdkevls 94 
                          tg++k+v+ 
  GSBRNA2T00075596001 206 TGRTKPVVL 214
                          *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-11107218IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MPIDGLYYRR AHSEVQFRLP EDLDLPVTFG GFNELGSEDD FFCSYMDIEK SDPDPTRLDH  60
LLLKAKKAMA LDKVAELWVV DPKRAKRMHR HQVVWNSNPT RHCPNCHHVI DNSYEVDDWP  120
GLPRGVKFDP SDPEIICHLL AKSGLSGLSS HPFTNELISA ALRTMGLFNT VCVPLFHRTI  180
KTYNTRTRKR RKIHYDDFGD VSWHKTGRTK PVVLDGAFSH CHGMYPIPVG PTLQKLMPAF  240
YLSTLSQQHL RKALGCRGTE PSIKLMLPNF GLASSKRVQV DQPDYSFFTC NSPPMR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075596001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078HZX40.0A0A078HZX4_BRANA; BnaC08g46880D protein
STRINGBo9g154540.11e-150(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.13e-39NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]