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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00067987001 | ||||||||
Common Name | GSBRNA2T00067987001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 282aa MW: 32352.2 Da PI: 8.4348 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 148.9 | 2.6e-46 | 8 | 134 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrFhPt+eel+++yLk+ v g+ ++ evi ++iy+++PwdLp+ + +e+ewyfF++r++k+ +g r++r+t++gyWkatg+d+++ GSBRNA2T00067987001 8 PGFRFHPTEEELLNYYLKNMVYGNISKV-EVIGFLNIYRHDPWDLPHLSTIGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKI 96 9***********************9999.99***************7777799************************************* PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s ++ +glkktLvfy+grap g+ktdWvm+e+r+ GSBRNA2T00067987001 97 ISLsePKRMIGLKKTLVFYSGRAPGGSKTDWVMNEFRM 134 997556777***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 53.085 | 6 | 152 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.32E-54 | 7 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-25 | 8 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MSKEIELPGF RFHPTEEELL NYYLKNMVYG NISKVEVIGF LNIYRHDPWD LPHLSTIGER 60 EWYFFVPRER KHGNGGRPSR TTEKGYWKAT GSDRKIISLS EPKRMIGLKK TLVFYSGRAP 120 GGSKTDWVMN EFRMPDNFTL PKDVVLCKVY RKATSLKVLE QRAEMGAKMN QTCPNSPLSS 180 SDTISFVGKE EDMMMTSFPF PQEAAMKEAN NNNFMLQGHT EEKQRETEMK EPSSSLKLPC 240 GVLPLPELQL PKQGFEWGQD QFLSISPWLQ NLTPIVNLLN F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-44 | 8 | 157 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-44 | 8 | 157 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-44 | 8 | 157 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-44 | 8 | 157 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
4dul_A | 1e-44 | 8 | 157 | 19 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-44 | 8 | 157 | 19 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.26486 | 0.0 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00067987001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353307 | 0.0 | AK353307.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-I17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013625724.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
Refseq | XP_022554254.1 | 0.0 | NAC domain-containing protein 35-like | ||||
Swissprot | Q10S65 | 3e-85 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A078HNP9 | 0.0 | A0A078HNP9_BRANA; BnaC03g60970D protein | ||||
TrEMBL | A0A0D3BE56 | 0.0 | A0A0D3BE56_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6AXX8 | 0.0 | A0A3P6AXX8_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g092020.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3899 | 28 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 1e-167 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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