PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00054639001
Common NameGSBRNA2T00054639001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 531aa    MW: 60327.1 Da    PI: 9.4864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00054639001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-10351396555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h + ErrRR+++N++f  Lr+llP+      +K +K++iL+ A + + sLq
  GSBRNA2T00054639001 351 HMISERRRREKLNESFLALRSLLPQG-----TKKDKISILTIARKQLTSLQ 396
                          8899********************97.....7***********99888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-15337409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.348346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.24E-11348400No hitNo description
Gene3DG3DSA:4.10.280.106.3E-13350415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-8351396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-12352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MDAIFLTDDP NTRKLLIGSL AQSFGCVYVC IWSHYFPRPS NYLRSLDGYY NETSQEPSTS  60
SGSLARRLFH EYRQSVIPLQ NGHIPSIAFM NNLPYLEISP QDTQRLAYND AQRHLYQEAS  120
IQTVIFMGCR SGEIELGLTY DAANMKIGES LREWFPQDFI RKSSPPNSDY LRPQPPPSSS  180
SSSFRSVDSP QNISEFSSPL FPLFPEPSTT TDDAVNVLLH SLLAPVTSTP TGNMIHQQQQ  240
ESLFRNSKRE EEAITKAILA VLTTSSTPPS TSSPPLRKRR ATAFKRYYCM DNGGGGSGRA  300
PSSVRKQSMS RRAISFYTRL NIYRRERFAR ASSTTSGGGD RSGPTATQLH HMISERRRRE  360
KLNESFLALR SLLPQGTKKD KISILTIARK QLTSLQGEIS KLVERNRELA GEREMENDLQ  420
PDERFNVRIR YISESTSRER IFDLRVAHKG ANIRADDLMI RLLEMLKQIN NVSLVSINAQ  480
TRAREDEGTS VVLVSLRLKI EGEWDESSFK KQYEEMLLTW LNDNKFDYFL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354359ERRRRE
2355360RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00054639001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619569.10.0PREDICTED: putative transcription factor bHLH041
RefseqXP_013673259.10.0putative transcription factor bHLH041
RefseqXP_022569086.10.0putative transcription factor bHLH041
SwissprotQ9LTS41e-180BH041_ARATH; Putative transcription factor bHLH041
TrEMBLA0A078JG630.0A0A078JG63_BRANA; BnaC09g53530D protein
STRINGBo9g128480.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-160bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]