PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00036510001
Common NameGSBRNA2T00036510001, LOC106397810
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 312aa    MW: 34508.9 Da    PI: 8.6272
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00036510001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-20138187255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  GSBRNA2T00036510001 138 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 187
                          59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.33E-34137197No hitNo description
SuperFamilySSF541713.86E-23138196IPR016177DNA-binding domain
PROSITE profilePS5103223.42138195IPR001471AP2/ERF domain
SMARTSM003801.8E-38138201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-32138196IPR001471AP2/ERF domain
PfamPF008472.0E-14139187IPR001471AP2/ERF domain
PRINTSPR003672.7E-11139150IPR001471AP2/ERF domain
PRINTSPR003672.7E-11161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEAAMNMYSS RTVHQSDSFG GGELMEALVP FIKSVSTSSS PPPPASASAF INPAASAFSL  60
PTFPGYHPEH FMTQPFTYGS DLNQTGSSLI GLNNLSSSQI HQIQSQIHHN HPLLRPKPLL  120
MKQPGVAGSC FPAKPTKLYR GVRQRHWGKW VAEIRLPRNR TRLWLGTFDT AEEAALAYDK  180
AAYKLRGDHA RLNFPNLRHN GSHIGGEFGE YKPLHSTVDA KLEAICQSMA ETQKQDKTAK  240
ASKKRASTVK KTEKVDLSEK VSPVTEFVES AGSSPLSELT FADTEEQPRW NETFSLEKYP  300
SYEIDWDSIL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21137195160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00036510001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529451e-129AK352945.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-I08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128273.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
RefseqXP_013693893.10.0ethylene-responsive transcription factor RAP2-4
SwissprotQ8H1E41e-157RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A078GNU40.0A0A078GNU4_BRANA; BnaA02g18720D protein
TrEMBLM4CVU60.0M4CVU6_BRARP; Uncharacterized protein
STRINGBra008343.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-108related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  5. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  6. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]