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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00035476001 | ||||||||
Common Name | GSBRNA2T00035476001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 295aa MW: 32598.2 Da PI: 7.4441 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.7e-17 | 58 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +gr++AeIrdp++ + r +lg+f+tae+Aa a++ a+++++g GSBRNA2T00035476001 58 TRYRGVRRRP-WGRYAAEIRDPTS---KERRWLGTFDTAEQAACAYDCAAREFRG 108 68********.**********854...4999*********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.3E-10 | 58 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 59 | 117 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-28 | 59 | 116 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.431 | 59 | 116 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-32 | 59 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 60 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.99E-22 | 66 | 115 | No hit | No description |
PRINTS | PR00367 | 2.5E-9 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MEEALRKFNE STHSFLPGYE PDPIPLTRIF ASDANSPQVN NTPSSKEAIV TITGSGRTRY 60 RGVRRRPWGR YAAEIRDPTS KERRWLGTFD TAEQAACAYD CAAREFRGSK ARTNYTYPVT 120 NPVAEPRFSF SSNKSMKAVR SPIPSPLKMN TQPLLWYSSH ETATNGSSSP SCSLTKTASI 180 SSSADENYTE FFPQEHSDSG LLQDIVQEFL KKKRNQPPPL IPPPPPPPSP PMVGHLENFR 240 EFSANSLFQP MVETSKLDCY GNISYQDGDS GFFYGMSSVA DGGFTYGSDA WGLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 53 | 115 | 8 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in the embryo at four-cell stage. At the globular stage, localized in cotyledons primordia. Later confined to embryonic cotyledons tips. Expressed from embryogenesis onward in the central zone of the shoot apical and floral meristems, in organ anlagen, and (transiently) in the distal domains of organ primordia. {ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apical and floral meristems, and in organ primordia. Transient expression during shoot regeneration. {ECO:0000269|PubMed:11752375, ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryo patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11752375, ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00035476001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:11752375}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009118150.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR1 | ||||
Swissprot | Q9SAD4 | 4e-81 | ESR1_ARATH; Ethylene-responsive transcription factor ESR1 | ||||
TrEMBL | A0A078GJC7 | 0.0 | A0A078GJC7_BRANA; BnaA09g46720D protein | ||||
STRING | Bra026942.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14072 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12980.1 | 5e-59 | ERF family protein |