PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00028858001
Common NameGSBRNA2T00028858001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 1286aa    MW: 145155 Da    PI: 7.8552
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00028858001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.1e-074477337
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                          W + E e+++da +++G + Wk++a+ + ++R+ 
  GSBRNA2T00028858001 44 QWAKVELERFYDAYRKHGRD-WKKVAAAVRNNRSV 77
                         69999*************77.*******9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.48E-64390IPR009057Homeodomain-like
PfamPF065843.3E-29552651IPR033471DIRP domain
SMARTSM011354.2E-47552652IPR033471DIRP domain
Gene3DG3DSA:1.10.472.101.6E-40955977IPR013763Cyclin-like
SuperFamilySSF479541.48E-26959977IPR013763Cyclin-like
Gene3DG3DSA:1.10.472.101.6E-4010191137IPR013763Cyclin-like
SuperFamilySSF479541.48E-2610201124IPR013763Cyclin-like
PfamPF001343.3E-810331095IPR006671Cyclin, N-terminal
CDDcd000438.38E-1510331100No hitNo description
SMARTSM003858.3E-1410391120IPR013763Cyclin-like
PfamPF168992.2E-1311281228IPR031658Cyclin, C-terminal domain 2
SuperFamilySSF479545.37E-2711281254IPR013763Cyclin-like
Gene3DG3DSA:1.10.472.102.2E-2211381230IPR013763Cyclin-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1286 aa     Download sequence    Send to blast
MGPSRTSKSV YKRSNKEPSP EKELRNSSKT KPRKKRLTDK LGPQWAKVEL ERFYDAYRKH  60
GRDWKKVAAA VRNNRSVDMV EALFNMNRAY LSLPEGTASV VGLIAMMTDH YSVIEESESE  120
EEEEEEEGHG ASGVSVKYQK RKLAKLSSID FRQEVIPPHS VASAEGCLPF LKLTQAYGIE  180
RRAAGKRTPR FPVPSEYERE DREGCMPPSK RAKKQLEADD DDTLALAMAN AVRRGEGSPY  240
RRAEVNGSTS NGKMSQAKEA QSKHGASSMV RNVVTISRDR RHIKAAPGGA LLVNTEGVGT  300
VEKGKNVRFE EAEGAASNDS GEAGSANEGF KSGDEFEALQ ALAALSGLLS PDELKESESN  360
PQLKEDRIAN NVDEKPNTPE TFVRSYHRRK SKQAAPEDSL ILPVSPADAN AVSIGELGTS  420
NRKRRTLHDK ESAEDDNLKT MFKARRADQS PPKRLKTAKT AEESSSPSDK KITEPDAVVS  480
ATQVSGPGPA SLRQRPPNRR KMSLKKSLRE RAKISETTHE KPHSCKKELL KEQVSTCLSC  540
PLVRRRCIYE WFYSAIDYPW FAKMEFIDFL NHLGIGTPRL TRLEWSVIKS SLGRTRRFSE  600
KFIQEERDKL KQYRESARKH YTELRTGARE ELPRDFAQPL SVGNRVIAIH PKTREVRDGK  660
ILAVDHNKCN VLFDDLGVDS VMDIDIMPLN PLEYMPYGLM RQIESKEVEL NRHPSSDKSA  720
LFPPHVLENI DFSMLPPEKQ NDRDKRVKTD QSYNIANDNA RQGENQRALM LEYASDAEEM  780
EPEMLGIVSG SRSIAQAMVD AAMKAASLVK DDKDKRNVVL QALDSMDEHH QALNYSVVSG  840
IKHQDQTNGS FEPHHQSWSP SNTEGLMASE LIASCLSTWL MIQRCTEKQY PPADVAQVME  900
IAVRSLEPRC PQNMPIYRDI QTCMGWITNQ IMFLNRLVVD SVSEFDRREL LLVMADFQTS  960
TQRAKWIFTP QKLEERYKAA NQRAVQLLEK CGTTQVEVDA SGSLTYPTQK VDAGGDQGDN  1020
KLKPLSVDEE RFMRAFYEAK VQEVCSAFEF PHKIQATALQ YFKRFYLQWS VMQHHPKEIM  1080
LTCVYAACKI EENHVSAEEI GKGIKQDHHV ILKYEMASLE FDLIVYAPYR AIEGFVSNME  1140
EFLQARDDEI QKLESLLKAA TAEADKVMLT DAPLLFPPGQ LALAALRIAN GVLEVVDFDR  1200
YLENIVSQPN SEHTTSELIK LLDEIEYLVK NYKYPSEKDM KHINRKLKSC LGHSSSHDES  1260
KKREKRSKHK SHRNSSDTPK GPPIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1kxu_A2e-31957125012290CYCLIN H
6o9l_92e-3195712552283Cyclin-H
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.95510.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00028858001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1187070.0AK118707.1 Arabidopsis thaliana At5g27620 mRNA for putative cyclin H (AtCycH1), complete cds, clone: RAFL21-01-O06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616256.10.0PREDICTED: protein ALWAYS EARLY 1-like
SwissprotQ6A3310.0ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBLA0A078GEY20.0A0A078GEY2_BRANA; BnaC02g39780D protein
STRINGBo2g155350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29622241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-63DNA binding
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]