PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00027279001 | ||||||||
Common Name | GSBRNA2T00027279001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 240aa MW: 27383.7 Da PI: 6.0394 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.4 | 5.8e-19 | 73 | 133 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+lF + + +ps++++++L+++l ++ e++ +WFqNrRa+ k+ GSBRNA2T00027279001 73 RQRWTPTPMQLQILERLFDQdTGTPSKQKIKDLTEELsqhgQIAEQNMCNWFQNRRARSKR 133 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 91.7 | 6.7e-30 | 72 | 135 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+l+++ + tP+k++i+++t+eL+++G+i ++N +WFQNr+aR+++kq GSBRNA2T00027279001 72 ARQRWTPTPMQLQILERLFDQDTGTPSKQKIKDLTEELSQHGQIAEQNMCNWFQNRRARSKRKQ 135 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.382 | 69 | 134 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-14 | 69 | 136 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.5E-11 | 71 | 138 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.37E-15 | 72 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.89E-10 | 73 | 135 | No hit | No description |
Pfam | PF00046 | 9.1E-17 | 73 | 133 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MMELDNQQQP NPMKVMTDEQ LETLRKQIAI YATICERLVE MHKTLTSQQD LAAGGRMGGL 60 YTDTSICQKM TARQRWTPTP MQLQILERLF DQDTGTPSKQ KIKDLTEELS QHGQIAEQNM 120 CNWFQNRRAR SKRKQHCGVG SSNNKNGEGE VETETETLNE KRRRPESLLV LPDGNNNNVI 180 GTTTTTSPRA EYLCFPEMSS DLHLLGVQSN KHKHHMNGDE HLVESYNLYD HVEDYDMSG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 134 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00027279001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189541 | 0.0 | AC189541.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004A18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009109967.1 | 1e-146 | PREDICTED: WUSCHEL-related homeobox 13-like | ||||
Refseq | XP_013654249.2 | 1e-146 | WUSCHEL-related homeobox 13-like | ||||
Swissprot | O81788 | 1e-108 | WOX13_ARATH; WUSCHEL-related homeobox 13 | ||||
TrEMBL | A0A078GHN6 | 1e-180 | A0A078GHN6_BRANA; BnaA08g14960D protein | ||||
STRING | Bra010531.1-P | 1e-145 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4620 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-104 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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