PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00023027001 | ||||||||
Common Name | GSBRNA2T00023027001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CAMTA | ||||||||
Protein Properties | Length: 920aa MW: 104529 Da PI: 7.6146 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 161.3 | 1.8e-50 | 30 | 146 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 +e +rwl+++ei+a+L n++ +++ ++ + pksg++++++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++n GSBRNA2T00023027001 30 EEaYTRWLRPNEIHALLSNHNYFTINVKPVHLPKSGTIVFFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGDDN 119 55589************************************************************************************* PP CG-1 92 ptfqrrcywlLeeelekivlvhylevk 118 ptf rrcywlL++++e+ivlvhy+e++ GSBRNA2T00023027001 120 PTFVRRCYWLLDKSQEHIVLVHYRETH 146 ************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 75.622 | 25 | 151 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.2E-72 | 28 | 146 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.1E-44 | 32 | 144 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 1.31E-13 | 371 | 457 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 2.23E-13 | 557 | 667 | No hit | No description |
Pfam | PF12796 | 8.7E-7 | 558 | 637 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.1E-15 | 558 | 670 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.49E-15 | 566 | 673 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 13.761 | 575 | 640 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.808 | 608 | 640 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2.7E-6 | 608 | 637 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50096 | 7.181 | 757 | 783 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 260 | 772 | 794 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 2.3E-4 | 795 | 817 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.761 | 796 | 820 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 8.5E-5 | 797 | 817 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 11 | 871 | 893 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.334 | 872 | 901 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 920 aa Download sequence Send to blast |
MAGVDSGRLI GSEIHGFHTL QDLDIRTMLE EAYTRWLRPN EIHALLSNHN YFTINVKPVH 60 LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP 120 TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSTTDHVSAK PVTEDINSGV 180 RNACNTARSN SLVARNHEIS LHEINTLDWD ELLVETGMTN QSSPTQDDVL YFTEQLQTAP 240 MGSAQQGNHQ AVYNGSTDIP SYLGLGDPVY QNNSPCGARE FSSQHLHCVV DPNQQTRDSS 300 ATVADEQGDA LLNNGYGSQE SFGKWVNNFI SDSPGSVDDP SLEAVYTPGQ ESSAPPAVVH 360 SQSNIPEQVF NITDVSPAWA YSTEKTKILV TGFFHDSFQH FGRSNLFCIC GELRVPAEFL 420 QMGVYRCFLP PQSPGIVNLY LSADGTKPIS QLFSFEHRSV PVIEKVVPQE DQLYKWEEFE 480 FQVRLSHLLF TSSSKISVFS SRISADNLLE AKKLASRTSH LLNSWAYLMK SIQANELPFD 540 QARDHLFELT LKNRLKEWLL EKVIENRNTK EYDSKGLGVI HLCAVLGYTW SILLFSWANI 600 SLDFRDKHGW TALHWAAYYG REKMVAALLS AGARPNLVTD PTKEYLGGCT AADIAQQKGY 660 EGLAAFLAEK CLVAQFRDMK MAGNISGNLE GVKAETSTNP GHSNEEEQSL KDTLAAYRTA 720 AEAAARIQGA FREHELKVRS KAVRFASKEE EAKNIIAAMK IQHAFRNYET RRKIAAAARI 780 QYRFQTWKMR REFLNMRKKA IKIQAVFRGF QVRRQYQKIT WSVGVLEKAI LRWRLKRRGF 840 RGLQVSQPEE KEGTEAVEDF YKTSQKQAED RLERSVVRVQ AMFRSKKAQQ DYRRMKLAHE 900 EAQLEYDGMQ ELDQMDMES* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.10070 | 0.0 | flower| leaf| seed| vegetative meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00023027001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY128295 | 0.0 | AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013655759.1 | 0.0 | calmodulin-binding transcription activator 5-like isoform X1 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A078J2Z8 | 0.0 | A0A078J2Z8_BRANA; BnaC08g47670D protein | ||||
STRING | Bra038040.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4021 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Publications ? help Back to Top | |||
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