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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00012643001 | ||||||||
Common Name | GSBRNA2T00012643001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 462aa MW: 51784.2 Da PI: 4.5911 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 98.6 | 9e-31 | 55 | 189 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 lp+G++F+P++ e++++ L+k + + +e+i++vd i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ GSBRNA2T00012643001 55 LPRGVKFDPSNPEIIWHLLAKTGSLGLtphpfI--DEFIPTVDqddgICYTHPKNLP-GVKHDGTMSHFFHRAIKAYSTGTRKRRKIHdd 141 799************888887743332354332..334666655567**********.677788999******************86555 PP NAM 80 ...sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +W++tg++k+v+ +g + g+kk++v+y+g++ +kt+Wvmh+y+l GSBRNA2T00012643001 142 dlgDVRWHKTGRTKTVVL-DGVQRGCKKIMVLYEGKS---VKTNWVMHQYHL 189 655899************.99************7665...56********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.26E-36 | 40 | 208 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.507 | 55 | 208 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-12 | 56 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MAGRAWLVDK NRIATKILCA SDPCRTVWNT NPTRHCPNCH HLIDNSHEVD DWPGLPRGVK 60 FDPSNPEIIW HLLAKTGSLG LTPHPFIDEF IPTVDQDDGI CYTHPKNLPG VKHDGTMSHF 120 FHRAIKAYST GTRKRRKIHD DDLGDVRWHK TGRTKTVVLD GVQRGCKKIM VLYEGKSVKT 180 NWVMHQYHLG TDEDEKDGEY VVSKIFYQQP QQQGVLKKGG DKDKAEEEVS EDIFAAATTT 240 PKADPVTPRL FTPEPSRQAV PLCSDSHLPN EYATPQEVSL AESKTSEAMY MEDEVQGAQR 300 DHERPSSEDE PAPETVIENG DNEIMRFDKE DENDQVNKEG EENHEDEEEG NWLDSDGSQF 360 ILNSQQLVEA LSLCDDLLQV GSQDTNNGGG GGGLRNKQQP CFGDYAHLGG TDDFKRDLED 420 CQKLIIDPCN IELDTPPEFR LSQLEFGSQE SFLAWGTGKT D* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00012643001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189476 | 1e-165 | AC189476.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB080N15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013690339.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A078G7G4 | 0.0 | A0A078G7G4_BRANA; BnaC07g11950D protein | ||||
STRING | Bo7g052860.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9707 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 0.0 | NAC family protein |