![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00009990001 | ||||||||
Common Name | GSBRNA2T00009990001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 351aa MW: 38597.5 Da PI: 8.1883 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.7 | 1.1e-53 | 17 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelvv+yLk+k+++ +l++ ++i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk GSBRNA2T00009990001 17 LPPGFRFHPTDEELVVHYLKRKAASAPLPV-SIIADVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDK 105 79****************************.89***************999999************************************ PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +vl++ ++++vg+kk Lvfy+g+ pkg+k+dW+mheyrl GSBRNA2T00009990001 106 PVLASdGNQKVGVKKALVFYSGKPPKGVKSDWIMHEYRL 144 ***9967788***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-65 | 12 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.321 | 17 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-28 | 18 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 351 aa Download sequence Send to blast |
MESTDSSGGP PPPQPNLPPG FRFHPTDEEL VVHYLKRKAA SAPLPVSIIA DVDLYKFDPW 60 ELPAKASFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPVLAS DGNQKVGVKK 120 ALVFYSGKPP KGVKSDWIMH EYRLIDNKPN NRPPGCDYGN KKNSLRLDDW VLCRIYKKNN 180 AGRHVENDKD HDMIDYIFRK IPSGLNHNVS RSMNFFPGRF SSAYGMFSDN DPGLYDGSSM 240 MCSSGTDAVN LNVCNGNPIA DVVGNGLNPV SSSGPMMMMM ANLKRALPEE QEVSPSKRFH 300 GVGGGGDCTN MSSSMVEEPP PLMQQQGGVL GDGLFRATSY QLPGLNWYSS * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-74 | 11 | 183 | 11 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-74 | 11 | 183 | 11 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-74 | 11 | 183 | 11 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-74 | 11 | 183 | 11 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-73 | 11 | 183 | 14 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-73 | 11 | 183 | 14 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-73 | 11 | 183 | 14 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-73 | 11 | 183 | 14 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-73 | 11 | 183 | 14 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-73 | 11 | 183 | 14 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-73 | 11 | 183 | 14 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-73 | 11 | 183 | 14 | 173 | NAC domain-containing protein 19 |
4dul_A | 9e-74 | 11 | 183 | 11 | 170 | NAC domain-containing protein 19 |
4dul_B | 9e-74 | 11 | 183 | 11 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.13753 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}. | |||||
Uniprot | TISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00009990001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF974761 | 0.0 | KF974761.1 Brassica napus NAC transcription factor 56-1 (NAC56-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009115491.1 | 0.0 | PREDICTED: NAC transcription factor 56-like | ||||
Swissprot | Q9LD44 | 0.0 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A078G445 | 0.0 | A0A078G445_BRANA; BnaA01g28710D protein | ||||
STRING | Bra021114.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15510.1 | 0.0 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|