PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00009182001
Common NameGSBRNA2T00009182001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 384aa    MW: 43199.6 Da    PI: 6.7059
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00009182001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-093093432155
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          k +yps++++  LA+++gL+++q+ +WF N+R ++
  GSBRNA2T00009182001 309 KWPYPSEQQKLALAESTGLDQKQINNWFINQRKRH 343
                          569*****************************885 PP
2ELK413.9e-14263284122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK qLlrKYsgyLgsLkqEF+
  GSBRNA2T00009182001 263 ELKGQLLRKYSGYLGSLKQEFM 284
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-17119163IPR005540KNOX1
PfamPF037903.4E-20121159IPR005540KNOX1
SMARTSM012567.0E-26170221IPR005541KNOX2
PfamPF037911.8E-20174219IPR005541KNOX2
PROSITE profilePS5121311.174263283IPR005539ELK domain
PfamPF037896.4E-11263284IPR005539ELK domain
SMARTSM011882.8E-8263284IPR005539ELK domain
PROSITE profilePS5007113.151283346IPR001356Homeobox domain
SMARTSM003895.3E-13285350IPR001356Homeobox domain
SuperFamilySSF466891.45E-19285361IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-28288348IPR009057Homeodomain-like
CDDcd000861.49E-12295347No hitNo description
PfamPF059203.4E-17303342IPR008422Homeobox KN domain
PROSITE patternPS000270321344IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MESGSNSTSC PMAFAGDNSD GPMCPMMMMM MPVITSHQQH HGHDQQHQHQ QQHDGYAYQS  60
HHQHSSLLFL QSLTPPSQEA KNKVRSSCSP SSGAPAYSFM EINHQNELLA GGLNPCSSAS  120
VKAKIMGHPH YHRLLLAYVN CQKVGAPPEV QARLEETCSS AAAAAASMGP TGSLGEDPGL  180
DQFMEAYCEM LVKYEQELSK PFKEAMVFLQ HVECQFKSLS LSSPSSFSVG YGEAAIERNN  240
NGSSEEEVDM NNEFVDPQAE DRELKGQLLR KYSGYLGSLK QEFMKKRKKG KLPKEARQQL  300
LDWWSRHYKW PYPSEQQKLA LAESTGLDQK QINNWFINQR KRHWKPSEDM QFVVMDATHP  360
HHYFMDNVMG NPFPIDHISS TML*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278287LKQEFMKKRK
2284288KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.1970.0seed
Functional Description ? help Back to Top
Source Description
UniProtRequired for shoot apical meristem formation during embryogenesis. Probably binds to the DNA sequence 5'-TGAC-3' (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00009182001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4805840.0GU480584.1 Brassica napus SHOOT MERISTEMLESS (STM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302988.10.0homeobox protein SHOOT MERISTEMLESS
SwissprotQ9M6D90.0STM_BRAOL; Homeobox protein SHOOT MERISTEMLESS
TrEMBLA0A078FYY60.0A0A078FYY6_BRANA; BnaC09g13580D protein
TrEMBLA0A3P6E3310.0A0A3P6E331_BRAOL; Uncharacterized protein
STRINGBo9g037420.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.10.0KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]