PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00008106001
Common NameGSBRNA2T00008106001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 337aa    MW: 37363 Da    PI: 4.665
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00008106001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.5e-17137186356
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr++  +g+WvAeIr p     +  +r +lg+f + +eAa a+++a+k+++ge
  GSBRNA2T00008106001 137 YRGVRQRT-WGKWVAEIRQP-----CrgARLWLGTFPSSYEAALAYDEAAKAMYGE 186
                          9****999.**********8.....337*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.0E-33136199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-28136194IPR001471AP2/ERF domain
CDDcd000181.97E-29136194No hitNo description
PROSITE profilePS5103220.903136193IPR001471AP2/ERF domain
PRINTSPR003678.6E-9137148IPR001471AP2/ERF domain
PfamPF008472.0E-13137186IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-19137194IPR016177DNA-binding domain
PRINTSPR003678.6E-9159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGLHLWFRIL VKEKTLAEKI ETFFSFFPET VLMFFTGHEF VQMGLVKEKT LAEKIVTFLS  60
FFPETALAMR KRKSRDGATS VAETLNKWRE DNEITEAASR NDDGCLKPKP IRKAPPKGSR  120
KGCMKGKGGP ENGIWNYRGV RQRTWGKWVA EIRQPCRGAR LWLGTFPSSY EAALAYDEAA  180
KAMYGEAARL NLPDISNVSS LTTAAGSVTT LSNESEVCAL EDTNVKEEDG GDEYGFVKSS  240
QCVKEEMGVP DSADTFGYGN EHEAWDFGVD EMFDVDEVMG LLDEINVSGQ ETTQSQDASL  300
LGSLNHMETA HPGVDCGYPI VQPSERNNSC VDLDRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-17136193260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873MRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00008106001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013744936.10.0dehydration-responsive element-binding protein 2C-like
SwissprotQ8LFR21e-103DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A078ITZ50.0A0A078ITZ5_BRANA; BnaA04g29310D protein
TrEMBLA0A3P6CAF00.0A0A3P6CAF0_BRACM; Uncharacterized protein
STRINGBra017011.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.15e-94ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  5. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]