PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00005693001 | ||||||||
Common Name | GSBRNA2T00005693001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 302aa MW: 34726.3 Da PI: 8.9875 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63.1 | 4.3e-20 | 13 | 105 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffkv ++s+ lv+p f+ ++ ++k+ + +++l de gr W+v+ + + + g +v++kGW++F++++ L+ gDf+vF++d s+f GSBRNA2T00005693001 13 FFKVC--LPEFSSRKLVIPPAFV-NI-LEKPLPNQVVLLDEIGRLWNVETKTEEGVGDVVFKKGWEKFANDHSLEFGDFLVFSYDAVSRF 98 66766..67788999********.44.5567999****************99999999**************************998999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 vk+f+k GSBRNA2T00005693001 99 --SVKIFDK 105 ..*****98 PP | |||||||
2 | B3 | 32.6 | 1.4e-10 | 201 | 284 | 15 | 98 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE- CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfr 98 ++ +p +f++ +g++ ee + l de+g++W +k+ + +++r+ + W +F+++++L + ++F+++ ++ ++ + +v++fr GSBRNA2T00005693001 201 QMEIPTSFLKWNGIEMEE--DFELCDENGKKWPMKVVIHDRGQRF-SPGLWLSFCRSHKLSTSNKCLFEFIvrSDgTCNQVLVRIFR 284 689******999988777..57777***********776666665.5668*******************773244455566666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-23 | 9 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-22 | 11 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.607 | 11 | 106 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.10E-19 | 13 | 104 | No hit | No description |
Pfam | PF02362 | 1.0E-18 | 13 | 106 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-16 | 13 | 106 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.5E-16 | 184 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-15 | 184 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.673 | 187 | 286 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.03E-9 | 189 | 284 | No hit | No description |
SMART | SM01019 | 1.2E-5 | 191 | 286 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-9 | 201 | 284 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MVERSEKGKD MEFFKVCLPE FSSRKLVIPP AFVNILEKPL PNQVVLLDEI GRLWNVETKT 60 EEGVGDVVFK KGWEKFANDH SLEFGDFLVF SYDAVSRFSV KIFDKNGCKK YLVAVTTADR 120 SRVAVEKEPV LVKPVDDIST KRCGKSRKRV PVKEEPSGNR VKDPCEMGCV PENKKHKGFE 180 EPNYKPKNPH FVRNITLCFR QMEIPTSFLK WNGIEMEEDF ELCDENGKKW PMKVVIHDRG 240 QRFSPGLWLS FCRSHKLSTS NKCLFEFIVR SDGTCNQVLV RIFRGRMLTT VTINGYQVLV 300 M* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.9982 | 0.0 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00005693001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009112350.1 | 0.0 | PREDICTED: putative B3 domain-containing protein At5g66980 | ||||
Swissprot | Q9FGD2 | 1e-111 | Y5698_ARATH; Putative B3 domain-containing protein At5g66980 | ||||
TrEMBL | A0A078G034 | 0.0 | A0A078G034_BRANA; BnaA09g07640D protein | ||||
TrEMBL | M4F7S1 | 0.0 | M4F7S1_BRARP; Uncharacterized protein | ||||
STRING | Bra037132.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12802 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 1e-113 | B3 family protein |
Publications ? help Back to Top | |||
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