PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00000719001
Common NameGSBRNA2T00000719001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 512aa    MW: 57968 Da    PI: 7.0514
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00000719001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-15354403355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  GSBRNA2T00000719001 354 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 403
                          9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.47E-12191319No hitNo description
SMARTSM003801.4E-15192323IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-9192214IPR001471AP2/ERF domain
PROSITE profilePS5103214.565192317IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-9281317IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-8285318IPR016177DNA-binding domain
CDDcd000188.24E-11352411No hitNo description
SuperFamilySSF541711.05E-17352412IPR016177DNA-binding domain
PROSITE profilePS5103219.269353411IPR001471AP2/ERF domain
SMARTSM003803.3E-30353417IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-18353411IPR001471AP2/ERF domain
PfamPF008476.9E-10354403IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MANWLTFALS PMEMMKSPEH PHFVSYDDDS SAPYLIDNLY VLKEEAETSM ADSTALASFF  60
NPQTHSPTHI PKLEDFLGDS SSSSFVRFPD NHPETLDSSS LYHPRHHTGV TGLFSDHQHD  120
DFQAVEGGVK EGCTKEGALS LAVNNTDGER VKSSRKVTVS KKEAKAVETT STDDSTKKKK  180
KVVESFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQGNLSV YLCCLSMEAT  240
LWRKGPNFKL EIQTKRTNNN RIEYVYLFIF VIEFFITILP PFLFMYLGGY DKEDKAARAY  300
DLAALKYWGP AATTNFQIAS YSKELEEMNH MTKQEFIASI RRKSSGFSRG ASMYRGVTRH  360
HQQGRWQARI GRVAGNKDLY LGTFATEEEA AEAYDIAAIK FRGINAVTNF EMNRYDVEAI  420
MNSSFPVGGS AVKRHKQLSL ESPPPPTDDH NIQQLLLPSS SVELDPNSIP CGIPFDPSVL  480
YHPQNFFQHY PDPTVPMNQA DQFFMWSNQS Y*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Confined to the central region of inflorescence ane floral meristems, progressively restricted to the innermost cells of the dome. Also detected in developing stamen locules and later in sporogonous cells within locules. In carpel primordia, found in placenta and in young ovule primordia. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00000719001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534040.0AK353404.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-G24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013643238.10.0AP2-like ethylene-responsive transcription factor AIL7
RefseqXP_013728156.10.0AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ6J9N81e-180AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A078F6W90.0A0A078F6W9_BRANA; BnaA06g24400D protein
STRINGBra024394.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-173AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]