PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G414315_P01
Common NameLOC103635399, ZEAMMB73_028972
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 347aa    MW: 37267.4 Da    PI: 8.1549
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G414315_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.68e-26180238259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D ++WrKYGqK++kgs++pr+YY+C+s  +C+++k vers   p v+++tY  +H h 
  GRMZM2G414315_P01 180 TDLWAWRKYGQKPIKGSPYPRGYYKCSSLkSCTARKLVERSPAKPGVLVVTYIADHCHA 238
                        699************************998**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.554174240IPR003657WRKY domain
SuperFamilySSF1182901.29E-22178240IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-25178240IPR003657WRKY domain
SMARTSM007747.0E-30179239IPR003657WRKY domain
PfamPF031069.1E-21181237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDCSNDWDLQ ALVRSCGGGN RSVQHSRAGA DAPPREEAAM VRGGGRAAAQ LELLGQPVGA  60
VSSWRRGLDH FDDLVDRDRD PRRMPFSVSV TPSSSRETTA TCGPMARAGQ QLRHDDVLFS  120
FSAAAAAGVV SRSGHQMVQP RRRQPGRKAG GRTPRPKRSK KRQVKKVVCE VPAAGGVVST  180
DLWAWRKYGQ KPIKGSPYPR GYYKCSSLKS CTARKLVERS PAKPGVLVVT YIADHCHAVP  240
AMLNALAGTT RNRPSSSSSA SPDDGDHNQD QETSSDGAAP SADNNSKVDD DDGAAAVAVA  300
VDENDACLLE DDGNCPFDGF FWPFDDDLDR FFDDDGGGVL GRRRLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-15161240279Disease resistance protein RRS1
5w3x_D3e-15161240279Disease resistance protein RRS1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G414315
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G414315_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656076.10.0WRKY transcription factor WRKY28
TrEMBLK7V1M40.0K7V1M4_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G414315_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Representative plantOGRP1998922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-30WRKY family protein