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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G379652_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 329aa MW: 35072.3 Da PI: 6.3384 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54 | 4.1e-17 | 179 | 225 | 5 | 54 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 GVr+++ +g+++AeIrd + ng +r+++g+f+t+e Aa a+++a+ +++ GRMZM2G379652_P01 179 GVRRRP-WGKFAAEIRDSTRNG--QRVWIGTFDTPEAAALAYDQAAYSMR 225 9*****.**********44465..***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.837 | 176 | 234 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-7 | 177 | 188 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-20 | 178 | 236 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-12 | 179 | 225 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.8E-28 | 179 | 240 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.75E-14 | 179 | 235 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-26 | 179 | 235 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-7 | 200 | 216 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MEPQFCSSYY YGHAGGAAYA HSDSSHYGLR RYDDDSVVVD SHCYSSSTMA SSGFVQQAAS 60 SAYYYYDPTA YSSDHHQHQQ QHPSSSSTAW ASSPSGATTP SSSHHQQQLL RFGGGAVDEY 120 YQEDGMGAVG MDQSSAHMVM GAASSTSSGA SSTTNTPDYL LLQEEEAAAG GGGDAPLIGV 180 RRRPWGKFAA EIRDSTRNGQ RVWIGTFDTP EAAALAYDQA AYSMRSTAAV LNFPVEHVQA 240 SLRALGLSVD AGGSPVLALK RRHCIRKRLP KNKTAAGKEQ QTKVVLAATA SSRRGHGHAE 300 QKQAASCGVL ELEDLGADYL EELLALSDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-25 | 179 | 241 | 17 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G379652 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G379652_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727883 | 1e-163 | KJ727883.1 Zea mays clone pUT5976 AP2-EREBP transcription factor (EREB166) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020397068.1 | 0.0 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A1D6HV36 | 0.0 | A0A1D6HV36_MAIZE; Ethylene-responsive transcription factor 1B | ||||
TrEMBL | A0A3L6DYU1 | 0.0 | A0A3L6DYU1_MAIZE; Ethylene-responsive transcription factor 1B | ||||
STRING | GRMZM2G379652_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-36 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G379652_P01 |