PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G306357_P02
Common NameLOC103651515, Zm.24880
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 691aa    MW: 74173.8 Da    PI: 5.0105
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G306357_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.88.7e-09489510526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+++  +GtC +Gd+CkF+H+
  GRMZM2G306357_P02 489 ECHNYKNNGTCARGDNCKFSHV 510
                        6********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.263430457IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5430455IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017431456IPR000571Zinc finger, CCCH-type
SMARTSM003560.012459485IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.16459483IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967484512IPR000571Zinc finger, CCCH-type
SMARTSM003560.008487511IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5488513IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6489510IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4490509IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MEDALAPPSV APTPSPLAAA AVLTRRRSHL DSASFRTLSR LFSHCLHINP SPCGISPPVP  60
EPVAADFVGG DPDDSPERPN GADFDRLKDV QIEAADAGGP SLHGTVHQPA AANSTLDLVE  120
AEAEALQLEG ADAVGVVEST SCMTRAEAGE SAVLVVESTS CKTTAEVEES AVGAGLAMVG  180
DVSLKSVESL LETKVDESVE VAVGDDEGCL LFEAMLTNFT GLIDDVDAGA IPTQRCAVSG  240
GDLQNSKASE DLKQLGDRIE EGEPLRNCDN GQNDGGGFEE GEIEGEFQDL GSEESGNSEH  300
GDEDGEDEKL EDNSISRGSG PNKSCDYGTQ FGNLQSIPET GNDHLILNRD AIVRGDAQIS  360
VTRAQAVTYD EVVDWNETPL PDNETVNPGK KRKRILTEER KAKKTKNKRK NRALQRIADG  420
VKRPKLTPVT KPKKPCHFYD HGKCRQGNNC KFSHDFTPST KSKPCTHFAC GSCLKGEECP  480
YDHELSKYEC HNYKNNGTCA RGDNCKFSHV MPTTEGTPTQ DAKTSDASLA YEKTNTREHT  540
RSQKNATVHN VAPSNSILRN LAGVSSKSQN VSNHIPKGVQ FLSIGKGQSN LDSLHLDALF  600
MEKQRNANGT QHNLGGHEAE RQKIVKQNSQ KPNLLLDDKN SSEGATRHPC SDPQKATLPV  660
NSIATPGSIH TQHEVSEASR ILQEFLFGAG S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.248800.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G306357
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G306357_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4699930.0JX469993.1 Zea mays subsp. mays clone UT3353 C3H-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675379.10.0zinc finger CCCH domain-containing protein 7
TrEMBLA0A096T5350.0A0A096T535_MAIZE; C3H-type transcription factor
STRINGGRMZM2G306357_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.14e-06C3H family protein