PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G178603_P01
Common NameLOC103627461, TCP16
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 220aa    MW: 22761.6 Da    PI: 10.5719
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G178603_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.81.1e-35532068112
                TCP   8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec..eaesssssasnsssg...... 88 
                         +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a   s++  +++ssss  ++++ +      
  GRMZM2G178603_P01  53 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSIVAATGSGTTPAvfvSSSapSTSSSSSHYHHQQ-Qatvvlg 143
                        59********************************************************99999444222322222222222222.2467777 PP

                TCP  89 .......................................kaaksaa.kskksqksaasalnlak 112
                                                               + a++aa  +  + + ++++lnl +
  GRMZM2G178603_P01 144 krpreegdaagsvfwaalpaaprateawgfspleaqaaaA-AAAAAyVPMAQAQAQHHHLNLLA 206
                        7777788888888888888877777777777777766532.22222233333333333444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.03253107IPR017887Transcription factor TCP subgroup
PfamPF036348.0E-3253138IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MATTREVSSS AAAMFHVYQT IPMPTPSTAA AGGGGAMVSV SAPAKPGKKE GGGKDRHSKV  60
NGRGRRVRMP IVCAARVFQL TRELGLKSDG QTIEWLLRQA EPSIVAATGS GTTPAVFVSS  120
SAPSTSSSSS HYHHQQQATV VLGKRPREEG DAAGSVFWAA LPAAPRATEA WGFSPLEAQA  180
AAAAAAAAYV PMAQAQAQHH HLNLLAALSG AARRAEEETR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G178603
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00655PBMTransfer from LOC_Os02g42380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G178603_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276990.0KJ727699.1 Zea mays clone pUT5638 TCP transcription factor (TCP16) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645973.11e-157transcription factor TCP21
SwissprotQ9FMX29e-42TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A060D1M61e-155A0A060D1M6_MAIZE; TCP transcription factor (Fragment)
STRINGGRMZM2G178603_P011e-156(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-32TCP family protein