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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g42380.1 | ||||||||
Common Name | LOC4330080, OJ1581_H09.2, Os02g0635800, OSNPB_020635800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TCP | ||||||||
Protein Properties | Length: 212aa MW: 21820.6 Da PI: 10.8106 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.4 | 1.5e-35 | 54 | 149 | 8 | 110 |
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksaaksk 98 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++++a ++ +a s +++ + + +k LOC_Os02g42380.1 54 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTTPAAFVssSAPST---------SSSHQHTLLGK 137 5899999***************************************************999996662211111.........12222222444 PP TCP 99 ksqksaasalnl 110 ++++++a+a ++ LOC_Os02g42380.1 138 RQRQESAAADAV 149 444444433333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.2E-31 | 53 | 139 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.009 | 54 | 108 | IPR017887 | Transcription factor TCP subgroup |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MSSRDAAATF HVYQPVQIPT ATVAPAAAVS AAPAEAVAQL VPAPSKKAAG AAGGKDRHSK 60 VNGRGRRVRM PIVCAARVFQ LTRELGLKSD GQTIEWLLRQ AEPSILAATG TGTTPAAFVS 120 SSAPSTSSSH QHTLLGKRQR QESAAADAVS VAGAASAFWA ALPAPGRPDA WGFSPLDAQP 180 TYVPMAQAHH HHLNLLAALS GAARRAEEES R* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.51204 | 0.0 | flower| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32971586 | 0.0 | ||||
Expression Atlas | Q6H878 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00655 | PBM | 25215497 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g42380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g42380 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061568 | 0.0 | AK061568.1 Oryza sativa Japonica Group cDNA clone:006-311-F05, full insert sequence. | |||
GenBank | AP004067 | 0.0 | AP004067.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1581_H09. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624938.1 | 1e-149 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 3e-40 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | Q6H878 | 1e-147 | Q6H878_ORYSJ; Os02g0635800 protein | ||||
STRING | OS02T0635800-01 | 1e-148 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 8e-28 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g42380.1 |
Entrez Gene | 4330080 |