PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G174834_P03 | ||||||||
Common Name | EREB20, LOC100193098, ZEAMMB73_695165 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | AP2 | ||||||||
Protein Properties | Length: 393aa MW: 43399 Da PI: 4.9377 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47 | 6.3e-15 | 65 | 125 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse...ng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + + k ++++lg ++ +e Aa+a++ a++k++g GRMZM2G174834_P03 65 SVYRGVTRHRWTGRFEAHLWDkHCLaalHNkkKGRQVYLGAYDGEEAAARAYDLAALKYWG 125 78*******************9999888445555*************************98 PP | |||||||
2 | AP2 | 56.1 | 9.4e-18 | 168 | 220 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + +k+ +lg+f+t eeAaka++ a+ +++g+ GRMZM2G174834_P03 168 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 220 89****99**********988422...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 23 | No hit | No description |
Pfam | PF00847 | 2.8E-12 | 65 | 125 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.85E-11 | 65 | 134 | No hit | No description |
SuperFamily | SSF54171 | 5.1E-17 | 65 | 134 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-16 | 66 | 134 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-27 | 66 | 139 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.31 | 66 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 115 | 135 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.89E-26 | 168 | 229 | No hit | No description |
SuperFamily | SSF54171 | 2.16E-18 | 168 | 229 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.6E-13 | 168 | 219 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-19 | 169 | 227 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.993 | 169 | 227 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-27 | 169 | 233 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MTMERSQPQH QQSPPSPSSS SSCVSADTVL VPPGKRRRRA ATAKANKRAR KDPSDPPPAA 60 GKRSSVYRGV TRHRWTGRFE AHLWDKHCLA ALHNKKKGRQ VYLGAYDGEE AAARAYDLAA 120 LKYWGPEALL NFPVEDYSSE MPEMEAASRE EYLASLRRRS SGFSRGVSKY RGVARHHHNG 180 RWEARIGRVL GNKYLYLGTF DTQEEAAKAY DLAAIEYRGA NAVTNFDISC YLDHPLFLAQ 240 LQQEQPQVVP ALDQEPQADQ REPETTAQEP VSSQAKTPAD DNAEPDDIAE PLITVDNSVE 300 ESLWSPCMDY ELDTMSRSNF GSSINLSEWF TDADFDSDLG CLFDGRSAVD GGSKGGVGVA 360 DFSLFEAGDG QLKDVLSDME EGIQPPTIIS VCN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.15628 | 0.0 | embryo| endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G174834 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in siliques, especially in seeds. Also detected in roots and flowers, and, to a lower extent, in leaves stems and seedlings. {ECO:0000269|PubMed:15500472, ECO:0000269|PubMed:15753106}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional activator involved in the activation of a subset of sugar-responsive genes and the control of carbon flow from sucrose import to oil accumulation in developing seeds. Binds to the GCC-box pathogenesis-related promoter element. Promotes sugar uptake and seed oil accumulation by glycolysis. Required for embryo development, seed germination and, indirectly, for seedling establishment. Negative regulator of the ABA-mediated germination inhibition. {ECO:0000250, ECO:0000269|PubMed:12084821, ECO:0000269|PubMed:15500472, ECO:0000269|PubMed:15753106, ECO:0000269|PubMed:16553903, ECO:0000269|PubMed:16632590, ECO:0000269|PubMed:9733529}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G174834_P03 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transiantly in leaves by sucrose, but not by abscisic acid (ABA). {ECO:0000269|PubMed:15753106}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035264 | 0.0 | BT035264.1 Zea mays full-length cDNA clone ZM_BFb0052E13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131733.1 | 0.0 | uncharacterized protein LOC100193098 | ||||
Swissprot | Q6X5Y6 | 4e-93 | WRI1_ARATH; Ethylene-responsive transcription factor WRI1 | ||||
TrEMBL | B4FDS6 | 0.0 | B4FDS6_MAIZE; AP2-EREBP transcription factor | ||||
STRING | GRMZM2G174834_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 6e-76 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G174834_P03 |
Entrez Gene | 100193098 |