PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G125460_P01
Common NameEREB210
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 284aa    MW: 30655.4 Da    PI: 9.0508
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G125460_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-17116166256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                        +y+G+r+++ +g+W+A I+dp+    +  r++lg++ t e Aa+a+++a+++++g+
  GRMZM2G125460_P01 116 QYRGIRQRP-WGKWAAKICDPV----KgVRVWLGTYPTVEAAARAYDRAARRIRGA 166
                        59*******.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.8E-31116179IPR001471AP2/ERF domain
CDDcd000181.33E-14116172No hitNo description
Gene3DG3DSA:3.30.730.101.7E-28116173IPR001471AP2/ERF domain
PROSITE profilePS5103222.194116173IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-20116174IPR016177DNA-binding domain
PRINTSPR003672.3E-10117128IPR001471AP2/ERF domain
PfamPF008474.9E-12117165IPR001471AP2/ERF domain
PRINTSPR003672.3E-10139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0001052developmental stagevascular leaf expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MMRSHSLTST PSSLFSSRNP YAAAQSSSTT SRHGAGCRLP TADFWPGFEA DGEDIHASHS  60
SDPQRDKPCF RLALLSRRQH AIQAASCKRS MVSRRAADCS HAAPCAKVKP GRCKIQYRGI  120
RQRPWGKWAA KICDPVKGVR VWLGTYPTVE AAARAYDRAA RRIRGAKAKV NFHSDTSSCV  180
TVPTTASRST AAAAAQAPAV LPPPKVEAQT ELSDEVKELS EELMAYENYT NFLGIPYMEG  240
GTTAASATTA AASAAAEESQ VPAPAGLWSF EDYYYPSSQS LFTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-19116172562ATERF1
3gcc_A7e-19116172562ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.114410.0endosperm| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G125460
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G125460_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277080.0KJ727708.1 Zea mays clone pUT5647 AP2-EREBP transcription factor (EREB210) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105270.27e-92ethylene-responsive factor-like protein 1
TrEMBLA0A060D7890.0A0A060D789_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G125460_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.18e-17ERF family protein