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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G090837_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 30942.5 Da PI: 7.4736 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.9 | 3e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++++ + G+g +W + +++ g++R++k+c++rw++yl GRMZM2G090837_P01 14 KGPWSPEEDRKLKEYIDENGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.7 | 4.6e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ GRMZM2G090837_P01 69 GDFSDDEDRIICSLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 679******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.316 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.58E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.602 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-23 | 70 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.08E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MGRAPCCDKA SVKKGPWSPE EDRKLKEYID ENGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNLKHGD FSDDEDRIIC SLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLVHG 120 LERYTAHSLS QRSSSTVSSS SSAAVAASPA EAAPIVPLQH LSSPHDYSHL IYSGGGGGYG 180 ASSMSTSLLS AAAAAAAGSR DREQQTLRTD APCLVDSGGG GGGHGIYFDE TCASAISGSS 240 VVHGLGTGNF VFGGLQLLQA QALLLATSGA ANQLDEPYSF AASCCYGEEA AAADG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G090837 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G090837_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008670028.1 | 0.0 | transcription factor MYB36 | ||||
TrEMBL | A0A1D6ELQ7 | 0.0 | A0A1D6ELQ7_MAIZE; Transcription factor RAX2 | ||||
STRING | GRMZM2G090837_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 4e-74 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G090837_P01 |
Entrez Gene | 103647248 |