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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G084014_P01 |
Common Name | Zm.39625 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
C2H2 |
Protein Properties |
Length: 439aa MW: 47367.2 Da PI: 6.3089 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G084014_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 15.8 | 4e-05 | 265 | 284 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C k+F+r n++ H+
GRMZM2G084014_P01 265 FSCPVCFKTFNRYNNMQMHM 284
89*****************9 PP
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2 | zf-C2H2 | 10.9 | 0.0014 | 351 | 371 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C Cgk F k + ++H +++
GRMZM2G084014_P01 351 CRRCGKAFAVKGDWRTHEKNC 371
*****************9987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 439 aa
Download sequence Send
to blast |
MENPYTSFFN SHPQHHRYYY HPAPPPPAPA PAAYHPSLPF FAAHRQPPAP TAPAPPSPPL 60 REALPLLSLA PTRHEERERR ARPPAPALED SEENGRDEGE EEQEEEEGPT ASSKSNHGQH 120 QRLGVGRQRG FFADLNASAA GDDDDPMDVE PEAAADGSGS GSAAAGDDVT VALRIGLPLP 180 GPAELVSDLS SSGGARRQQH QHDGGGGEEE EEDEEGDGEN GGGGEEEGTT AAAPLGFPSS 240 PIGRLNKGQY WIPTPSQILI GPTQFSCPVC FKTFNRYNNM QMHMWGHGSQ YRKGPESLRG 300 IQPTAMLRLP CYCCSPGCRN NIDHPRAKPL KDFRTLQTHY KRKHGLKPFL CRRCGKAFAV 360 KGDWRTHEKN CGRLWYCLCG SEFKHKRSLK DHARAFGRGH GFVGGGPPGA GCGGGLDDDD 420 DGAVSDVEHD GAATAARSM
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU969661 | 0.0 | EU969661.1 Zea mays clone 333696 zinc finger protein mRNA, complete cds. |