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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G076327_P01 | ||||||||
Common Name | LOC103638452 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | LBD | ||||||||
Protein Properties | Length: 245aa MW: 25337.5 Da PI: 6.8469 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129 | 2.1e-40 | 34 | 134 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC+++Cv+apyf +eq +++fa+vhk+FGasnv+kll ++p+++r da+ +++yeA+ar+rdPvyG+v+++++lqqq+ +l+ GRMZM2G076327_P01 34 PCGACKFLRRKCVTGCVFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQVPPHKRLDAVVTVCYEAQARIRDPVYGCVSHVFALQQQVVNLQ 125 7***********************9989**************************************************************** PP DUF260 92 aelallkee 100 +el +l+ + GRMZM2G076327_P01 126 TELTYLQGH 134 ***998865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.14 | 33 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-39 | 34 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSSSVLGASA GGGGGGSSTG GPTRGVAGAG GGGPCGACKF LRRKCVTGCV FAPYFDSEQG 60 AAHFAAVHKV FGASNVSKLL LQVPPHKRLD AVVTVCYEAQ ARIRDPVYGC VSHVFALQQQ 120 VVNLQTELTY LQGHLSTMEP PTPPPLAAQN QMPMTTAAFC VSNLPWPSND IPPTVDVSTL 180 LEEPQTQQSN WVSQQQQHYV MVGEGSGAGV SGSGAGARGG GDLQLLDRHG TAPVWSQPEP 240 PPCTQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-39 | 30 | 128 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-39 | 30 | 128 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G076327 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers (PubMed:12068116). Expressed in vascular tissues of hypocotyls, leaves, roots, developing floral organs and siliques (PubMed:19088331). {ECO:0000269|PubMed:12068116, ECO:0000269|PubMed:19088331}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G076327_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008659582.1 | 1e-179 | LOB domain-containing protein 30 | ||||
Swissprot | O81323 | 3e-64 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A1D6KC74 | 1e-178 | A0A1D6KC74_MAIZE; LOB domain-containing protein 31 | ||||
TrEMBL | A0A317Y8V9 | 1e-178 | A0A317Y8V9_MAIZE; LOB domain-containing protein 30 | ||||
STRING | GRMZM2G076327_P01 | 1e-179 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3346 | 37 | 82 | Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 9e-61 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G076327_P01 |
Entrez Gene | 103638452 |
Publications ? help Back to Top | |||
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