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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G069009_P02 | ||||||||
Common Name | LOC100281498 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C3H | ||||||||
Protein Properties | Length: 220aa MW: 23364.1 Da PI: 8.4424 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.2 | 2.8e-13 | 59 | 85 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ++++tGtCkyG+ Ck++H++ GRMZM2G069009_P02 59 PGQPECEHYMKTGTCKYGAACKYHHPQ 85 5789*********************97 PP | |||||||
2 | zf-CCCH | 27.8 | 4.3e-09 | 107 | 131 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +C ++a G+Ck+G++CkF H++ GRMZM2G069009_P02 107 SQPCAYYAHHGYCKFGPTCKFDHPM 131 679********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.6E-6 | 58 | 85 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.859 | 58 | 86 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.6E-11 | 60 | 85 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-6 | 62 | 85 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 64 | 83 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-5 | 104 | 131 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.624 | 104 | 132 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.1E-7 | 106 | 131 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 106 | 132 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-4 | 108 | 129 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MNQVTPAGGQ QAVPVGASYG LSHQGPTSAM TYGSHYAQLY SSSGTSSSNI QEYAFPERPG 60 QPECEHYMKT GTCKYGAACK YHHPQYFSGP KSNCILSPLG LPLRPGSQPC AYYAHHGYCK 120 FGPTCKFDHP MGTPNYSIST SSLTDVPIAP YPQSFPVTPM PSYLPSSDLR PQYTQVKDSS 180 ANPPPSPGTT YGPVGSISKV YAPHTLIRSP ASAAAGMQAS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.39484 | 0.0 | cell culture| meristem| ovary| root| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G069009 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G069009_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063761 | 0.0 | BT063761.1 Zea mays full-length cDNA clone ZM_BFc0104J02 mRNA, complete cds. | |||
GenBank | BT067868 | 0.0 | BT067868.1 Zea mays full-length cDNA clone ZM_BFc0176C01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001354949.1 | 1e-147 | uncharacterized protein LOC100281498 | ||||
Swissprot | Q5NAV3 | 8e-91 | C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5 | ||||
TrEMBL | A0A096QZU0 | 1e-156 | A0A096QZU0_MAIZE; Zinc finger CCCH domain-containing protein 58 | ||||
STRING | GRMZM2G069009_P01 | 1e-147 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 2e-37 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G069009_P02 |
Publications ? help Back to Top | |||
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