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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G052499_P01 |
Common Name | CA5P17, LOC103640778, ZEAMMB73_579820 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
NF-YC |
Protein Properties |
Length: 439aa MW: 49486.9 Da PI: 4.597 |
Description |
NF-YC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G052499_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NF-YC | 67.9 | 1.7e-21 | 23 | 121 | 2 | 97 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90
+k fw k+ ie +df +h++P++ +kk++ a + m+++++P++++kac +f+ el+l +w+ a++ +r+ + sdia+++++ + +
GRMZM2G052499_P01 23 IKEFWRKKqeeIEAIEDFGEHTIPVTCLKKVICAKKGKMMMTSDTPTFMTKACKIFVQELSLSAWMCANSHNRSIVLDSDIAESIASIESYG 114
799**9876779999***************************************************************************** PP
NF-YC 91 flvdivp 97
fl d+
GRMZM2G052499_P01 115 FLNDVLC 121
****875 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 439 aa
Download sequence Send
to blast |
MDRPINIRTS PRTPLSLSEQ QTIKEFWRKK QEEIEAIEDF GEHTIPVTCL KKVICAKKGK 60 MMMTSDTPTF MTKACKIFVQ ELSLSAWMCA NSHNRSIVLD SDIAESIASI ESYGFLNDVL 120 CAHLEKYKSD THLQSIKNPH HNRAINQSPT YLQPLSHQYQ MTQFIPQSTR YCPFIHIPPT 180 LPQTNDIHMH LPLPLPPITY MTKDLVFFEK GISNNDDAID LVTPPQLLPE ALSNIPNKCY 240 MCNIASTDTY CVGSAKTCNF IAEDGDMVFH FPYVPSKPFQ LSTSLPMTNG GCSIYTDITE 300 LNHIKLKVTH IEKSTYGINP EATFNVIDGQ QHAGDETTAA NHMHTEHGEL DAEFVTTTNA 360 NADDNNINWD EVDMASDSML MEFWRDVMMK EDPTSLPDTI STNDTILDPS DMLELEGCCD 420 DSYLLDDVMS NTSNDVRHG
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ726993 | 0.0 | KJ726993.1 Zea mays clone pUT3965 CCAAT-HAP5 transcription factor (CA5P17) gene, partial cds. |