PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

WOX

Protein Properties

Length: 295aa MW: 32686.5 Da PI: 7.4175

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G038252_P02	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.1	2.4e-21	117	177	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ GRMZM2G038252_P02 117 RQRWQPTPMQLQILENIFDQgNGTPSKQRIKEITAELshhgQISETNVYNWFQNRRARSKR 177 89***************99************************************97 PP
2	Wus_type_Homeobox	100.6	1.1e-32	116	179	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Ptp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq GRMZM2G038252_P02 116 ARQRWQPTPMQLQILENIFDQGNGTPSKQRIKEITAELSHHGQISETNVYNWFQNRRARSKRKQ 179 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-17	112	182	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.949	113	178	IPR001356	Homeobox domain
SMART	SM00389	1.3E-14	115	182	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.8E-18	116	180	IPR009057	Homeodomain-like
Pfam	PF00046	4.0E-19	117	177	IPR001356	Homeobox domain
CDD	cd00086	8.75E-15	117	179	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MLSRAASRIA SNRRLAVRGS SGMEWVDRTK ASAAAAAAAA DERAGGAEGL AGYVKVMTDE 60 QMEVLRKQIS IYATICEQLV EMHRALTEHQ DTIAGIRFSN LYCDPQIIPG GHKITARQRW 120 QPTPMQLQIL ENIFDQGNGT PSKQRIKEIT AELSHHGQIS ETNVYNWFQN RRARSKRKQA 180 ASLPNNAESE AEVDEESLTD KKPKSDRSLQ DNKAMGAHNA DRISGMHHLD TDHDQIGGMM 240 YGCNDNGLRS SGSSGQMSFY GNIMPNPRID HFPGKVESSR SFSHLQHGEG FDMFG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	178	RRARSKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.28488	0.0	ear\| meristem\| root\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G038252

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	25215497	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G038252_P02

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063919	0.0	BT063919.1 Zea mays full-length cDNA clone ZM_BFc0120C21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001288365.1	0.0	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-130	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	C0P6K0	0.0	C0P6K0_MAIZE; HB transcription factor
TrEMBL	K4JE98	0.0	K4JE98_MAIZE; HB-type transcription factor (Fragment)
STRING	GRMZM2G038252_P02	0.0	(Zea mays)
STRING	GRMZM2G069274_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76
Representative plant	OGRP1873	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-57	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	GRMZM2G038252_P02

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]