PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G018984_P02
Common NameEREB180, LOC100192457
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 340aa    MW: 36889.4 Da    PI: 4.9067
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G018984_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-18101150255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +++G+r+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a++  +++l+g
  GRMZM2G018984_P02 101 QFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFSTAEDAARAYDVEARRLRG 150
                        69*******.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-32100159IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-21101159IPR016177DNA-binding domain
SMARTSM003806.0E-37101164IPR001471AP2/ERF domain
PROSITE profilePS5103223.499101158IPR001471AP2/ERF domain
CDDcd000181.55E-29101160No hitNo description
PRINTSPR003673.3E-11102113IPR001471AP2/ERF domain
PfamPF008471.7E-10102150IPR001471AP2/ERF domain
PRINTSPR003673.3E-11124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MCGGAILAEL IPPTRRVASK PVTEGHLWSA SSKKAGSGRD KRHQHEYADD DFEAAFEDFD  60
DDFDVHEDDE DGHFVFSSKS ALSPALHDGR AASQKKQRGR QFRGIRQRPW GKWAAEIRDP  120
HKGTRVWLGT FSTAEDAARA YDVEARRLRG SKAKVNFPAA SGRARGRARP RRGDDGNPRT  180
APETQHPAQP ALLPRGERET QRKEGIAAVK PEATESFDVG GGLFFDMAFP TFPASPPPQA  240
VDTSFAGSTA TSETGSPAKR PRCDEDSSEG GSGSALELAD ELAFDPFVLL QMPYSGGYDD  300
DSLDGLFAAD EAVQQDVGNG MDGVRLWSFD EFPAVDGSVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2298158263ATERF1
3gcc_A6e-2298158263ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.804570.0root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G018984
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G018984_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0393000.0BT039300.1 Zea mays full-length cDNA clone ZM_BFc0004M21 mRNA, complete cds.
GenBankEU9702440.0EU970244.1 Zea mays clone 342610 root abundant factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001336749.10.0uncharacterized protein LOC100192457
TrEMBLB4FQB20.0B4FQB2_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G018984_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.15e-23ERF family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]