PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G006493_P06 | ||||||||
Common Name | LOC100272717, ZEAMMB73_692678 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C3H | ||||||||
Protein Properties | Length: 235aa MW: 25969.3 Da PI: 8.2215 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.9 | 3e-07 | 1 | 17 | 10 | 26 |
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 +rtG Ck+ +CkF+H+ GRMZM2G006493_P06 1 MRTGSCKFATNCKFHHP 17 8***************9 PP | |||||||
2 | zf-CCCH | 21.8 | 3.3e-07 | 139 | 165 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Cky +C+++H++ GRMZM2G006493_P06 139 PGQPECQHFVKSGFCKYRMKCRYHHPR 165 5789*********************96 PP | |||||||
3 | zf-CCCH | 26.2 | 1.4e-08 | 186 | 211 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G+CkyG+ C F+H++ GRMZM2G006493_P06 186 DQPVCTYYGRYGFCKYGPACMFNHPF 211 6899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 80 | 1 | 18 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.634 | 1 | 19 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.018 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.77 | 138 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.3E-4 | 184 | 211 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.483 | 184 | 212 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-6 | 185 | 212 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-6 | 186 | 211 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MRTGSCKFAT NCKFHHPDPT NASSKEPGLE HENGDVPLQN VQGSSQPSLQ MWPDQRALNE 60 QHVPFLAPAP SYSGGMVPPQ GMYPSSDWSG YHQVPLNPYY PPGVPFPHFP AAHMNHPMYK 120 AADIPGHQPP PSDEYPERPG QPECQHFVKS GFCKYRMKCR YHHPRSRQSA PPPAGLSPIG 180 LPIKPDQPVC TYYGRYGFCK YGPACMFNHP FNFGPPVPAA GPPLPGQYPT HGNFA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G006493 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G006493_P06 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039234 | 0.0 | BT039234.1 Zea mays full-length cDNA clone ZM_BFc0001O03 mRNA, complete cds. | |||
GenBank | BT068392 | 0.0 | BT068392.1 Zea mays full-length cDNA clone ZM_BFb0150F03 mRNA, complete cds. | |||
GenBank | BT070061 | 0.0 | BT070061.1 Zea mays full-length cDNA clone ZM_BFb0370P20 mRNA, complete cds. | |||
GenBank | EU969866 | 0.0 | EU969866.1 Zea mays clone 336566 zinc finger CCCH type domain-containing protein ZFN-like 6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140642.1 | 1e-172 | uncharacterized protein LOC100272717 isoform 1 | ||||
Refseq | XP_008661567.1 | 1e-172 | uncharacterized LOC100272717 isoform X7 | ||||
Swissprot | Q2QTY2 | 1e-127 | C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65 | ||||
TrEMBL | B4FQ46 | 1e-171 | B4FQ46_MAIZE; Uncharacterized protein | ||||
TrEMBL | K0DCN1 | 1e-171 | K0DCN1_MAIZE; C3H54 transcription factor (Fragment) | ||||
STRING | GRMZM2G006493_P02 | 1e-171 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-38 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G006493_P06 |
Entrez Gene | 100272717 |
Publications ? help Back to Top | |||
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