PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00005866.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Nin-like

Protein Properties

Length: 332aa MW: 37379.2 Da PI: 6.1833

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00005866.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	70	3.3e-22	242	291	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++l+dl++yF l+i++A+ +L c+Tv+KriCR++G++RWP Rkiks+ FANhyb_rscf00005866.1.g00001.1 242 AKMKLDDLRAYFRLTIEEASEQLRFCPTVVKRICRKFGVSRWPARKIKSI 291 7899********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.596	231	311	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-20	244	291	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEARSMTDSP WAVVPYHDPY DHEVPDVLSF VNDSPDPTLD ALFDGGVVPS SPHEYPIPQF 60 DNGIQDFPMS PMWDLGNNYN GNPGLAIENN VMQPPVGAPP PINFSCFGCQ VLREIVHFNC 120 DYIMTLEIHG RLGAICHAIQ ESRANYLYNS SISSEPHYQN IEHRGSEAVS DAVLPRAEGR 180 RLHYAARSSA SILSDSLRCD DFISPNPQRA EEMEQSAEEA SPKGNGPRLP RYSLAEQRER 240 AAKMKLDDLR AYFRLTIEEA SEQLRFCPTV VKRICRKFGV SRWPARKIKS IEKQISSLTP 300 LLYSCSESTR VHVAAKIKRL ERAVARFVPY VD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301476.1	1e-144	PREDICTED: uncharacterized protein LOC101302563
TrEMBL	A0A2P6PER9	1e-145	A0A2P6PER9_ROSCH; Putative transcription factor Nin-like family
STRING	XP_004301476.1	1e-144	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	3e-13	NIN like protein 7