PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001621.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 322aa    MW: 35568.6 Da    PI: 9.9398
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001621.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.5e-19166216255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ a eAaka+++a+ kl+g
  FANhyb_rscf00001621.1.g00001.1 166 HYRGVRQRP-WGKYAAEIRDP---NrRGSRVWLGTFDAAIEAAKAYDRAAFKLRG 216
                                     8********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.91E-31165224No hitNo description
Gene3DG3DSA:3.30.730.101.4E-31165225IPR001471AP2/ERF domain
PfamPF008473.8E-13166216IPR001471AP2/ERF domain
PROSITE profilePS5103223.749166224IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-22166225IPR016177DNA-binding domain
SMARTSM003809.6E-36166230IPR001471AP2/ERF domain
PRINTSPR003671.2E-13167178IPR001471AP2/ERF domain
PRINTSPR003671.2E-13206226IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEPALSSDMA ALDFIKNHLL GEFSPICKTS GCSVVTELQT TTTSPPPPPP PHHLRIYPDP  60
SLLLNLPSKS LTTSTMNSST SPPTIFQSLT TSSSSKPSHN SASFFEFQPE VQILNQTAPK  120
PVSTSARKPA LTISLPNKTE WIQFSNSDKS QLVVQKTVQN EEKKKHYRGV RQRPWGKYAA  180
EIRDPNRRGS RVWLGTFDAA IEAAKAYDRA AFKLRGSKAI LNFPLEAGKH DTPQPNKTAA  240
VVERKRRREE EVKPEVPVVV KKEKVTVSEE AVSYIKDMPL TPSSWTAALW DSDEDVKGIF  300
SVPPLSPLSP HPAMGFSQLM VV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-30163225264ATERF1
3gcc_A6e-30163225264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243247RKRRR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300355.11e-148PREDICTED: ethylene-responsive transcription factor 5
SwissprotO803418e-64EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A3Q8TD771e-139A0A3Q8TD77_FRAAN; Transcription factor ERF75
STRINGXP_004300355.11e-147(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-51ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]