PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001565.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WRKY

Protein Properties

Length: 140aa MW: 15776.6 Da PI: 10.2134

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001565.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	40.1	7.5e-13	111	134	1	24
---SS-EEEEEEE--TT-SS-EEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsY 24 ldDgy+WrKYGqK vk+++fprs FANhyb_rscf00001565.1.g00004.1 111 LDDGYRWRKYGQKAVKNNKFPRSV 134 59********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-13	96	134	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-10	103	133	IPR003657	WRKY domain
PROSITE profile	PS50811	13.907	106	140	IPR003657	WRKY domain
SMART	SM00774	4.8E-4	111	140	IPR003657	WRKY domain
Pfam	PF03106	1.4E-8	112	134	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MDTYPAFYSS SSTPPSAAAS SLSLNMVNTH PHHAYSNDHQ YQASNNKANG FLGLMSEMEV 60 SNSMSSITQQ SMKSFGEGES NTAVRLGMKK GDKKIRKPRY AFQTRSQVDI LDDGYRWRKY 120 GQKAVKNNKF PRSVHHDYKS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004310100.1	9e-85	PREDICTED: probable WRKY transcription factor 75
TrEMBL	A0A1S5SLB0	2e-83	A0A1S5SLB0_FRAVE; WRKY transcription factor 62
STRING	XP_004310100.1	3e-84	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1156	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	7e-21	WRKY DNA-binding protein 75