PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001044.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 1127aa MW: 128941 Da PI: 6.1613

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001044.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.3	3.8e-21	518	601	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++++etrtgC a++++++ ++++w+v+ FANhyb_rscf00001044.1.g00001.1 518 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----NRKKETRTGCLAMIRLRLVESNRWRVD 591 69**************************************99888.....8999******************* PP FAR1 80 kleleHnHel 89 +++l+HnH + FANhyb_rscf00001044.1.g00001.1 592 EVKLDHNHLF 601 ******76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd08972	1.56E-58	1	168	No hit	No description
Pfam	PF01149	1.1E-22	1	165	IPR012319	Formamidopyrimidine-DNA glycosylase, catalytic domain
SuperFamily	SSF81624	5.94E-20	2	85	IPR012319	Formamidopyrimidine-DNA glycosylase, catalytic domain
SMART	SM00898	4.9E-12	2	166	IPR012319	Formamidopyrimidine-DNA glycosylase, catalytic domain
PROSITE profile	PS51068	19.577	2	163	IPR012319	Formamidopyrimidine-DNA glycosylase, catalytic domain
Gene3D	G3DSA:3.20.190.10	8.8E-23	2	114	No hit	No description
SuperFamily	SSF81624	5.94E-20	133	177	IPR012319	Formamidopyrimidine-DNA glycosylase, catalytic domain
Gene3D	G3DSA:3.20.190.10	8.8E-23	149	172	No hit	No description
Pfam	PF06831	1.0E-29	171	258	IPR015886	DNA glycosylase/AP lyase, H2TH DNA-binding
SuperFamily	SSF46946	9.94E-24	171	258	IPR010979	Ribosomal protein S13-like, H2TH
SMART	SM01232	2.1E-32	171	263	IPR015886	DNA glycosylase/AP lyase, H2TH DNA-binding
Gene3D	G3DSA:1.10.8.50	9.7E-36	173	302	No hit	No description
Pfam	PF03101	1.1E-18	518	600	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-29	723	816	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.507	1009	1045	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.6E-5	1020	1047	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006284	Biological Process	base-excision repair
GO:0006289	Biological Process	nucleotide-excision repair
GO:0003684	Molecular Function	damaged DNA binding
GO:0003906	Molecular Function	DNA-(apurinic or apyrimidinic site) lyase activity
GO:0008270	Molecular Function	zinc ion binding
GO:0016799	Molecular Function	hydrolase activity, hydrolyzing N-glycosyl compounds

Sequence ? help Back to Top
Protein Sequence Length: 1127 aa Download sequence Send to blast
MPELPEVEAA RRAIQDNCVG KKITKAIVAD DSKVIDGVSR ADFEASLLGK SIISAHRKGK 60 NMWLQLDSPP FPSFQFGMAG AVYIKGVAVT KYKRSAVKDT DEWPSKYSKV FVQLKGVLHC 120 KYIVCTKFLG YEMLHTSLIK ITVALSRLDD GLEFSFTDKR RFAKVRLLKD LGPDALLEPM 180 TVDVLFASLS KKKISIKALL LDQSFISGIG NWVADEVLYQ ARIHPEQSSA TLSKECVEAL 240 HKSIKEVIEK SVEVGADSDQ FPSNWIFHSR EKKPGNVLVD GKKINFITVG GRTSAFVPEL 300 QKLTGNQAAK AGSKRTSKRV DDVDEEASDE EVKGPAKSKK GRKPGGQAKR STVKRKSKGS 360 DEDSDNDDST DDVDHEDDDS ADEDIKNKKR KVTTNKQSKA EMTSKKKIEE GSQNSEQLLE 420 DENNDLGNDC EQLFGIEGNE PESERDDTSD QFFEIDSNDN ENDRSELNEQ LFEIQGNDHE 480 MSGNDDTVID IQNGGSQEKV YPQPVVGLEF DSYDDAYNYY NCYAKELGFA IRVKSSWTKR 540 NSKEKRGAVL CCNCEGFKTM KEANNRKKET RTGCLAMIRL RLVESNRWRV DEVKLDHNHL 600 FDHERAQNSK SHKKMDSGAK RKMEPTLDVE VRTIKLYRTP GTDIVGYGSS NSYEGESNNY 660 VDVFKRLKLK QGDARAIYKY FSRVQLTDPN FFYVYDLSDE GSLRNVFWID SRSRAAYSYF 720 GDVVAFDTTC LSNNYEIPLV AFVGVNHHGQ TILLGCGLLA DETLETYIWL FRAWLTCMSG 780 RPPQTIITTQ CKAIHSAIVE VFPRAHHRLC TSHVVQSILE NMEALQDYEA FQMILSRTVY 840 DSLKVDEFES GWEDMIQRFG IRNHEFLQSL YEDREHWGPA YSKDTCFSGM PDFQNGESTR 900 PFFDGHIHQK TSFEEFFEVY DIVLENKRQE EAHNDVESRD LNPILRTRCY YELQLSKFYT 960 KDVFRKFQHE VAMMSSCFSI TQVHTNGPIV TYMIKEREGE EILRGVRNFE VMYDKAGAEV 1020 RCMCSCFNLN GYLCRHALCI LNYNGVEEIP FQYIFSRWRK DFKRLYVPDL GSNNVDITNP 1080 VQWFDHLYRR AMQVVQEGMI SHDHYMVCWQ AFKESLNKVR LVADKQG

Sequence ? help Back to Top

Protein Sequence Length: 1127 aa Download sequence Send to blast

MPELPEVEAA RRAIQDNCVG KKITKAIVAD DSKVIDGVSR ADFEASLLGK SIISAHRKGK  60
NMWLQLDSPP FPSFQFGMAG AVYIKGVAVT KYKRSAVKDT DEWPSKYSKV FVQLKGVLHC  120
KYIVCTKFLG YEMLHTSLIK ITVALSRLDD GLEFSFTDKR RFAKVRLLKD LGPDALLEPM  180
TVDVLFASLS KKKISIKALL LDQSFISGIG NWVADEVLYQ ARIHPEQSSA TLSKECVEAL  240
HKSIKEVIEK SVEVGADSDQ FPSNWIFHSR EKKPGNVLVD GKKINFITVG GRTSAFVPEL  300
QKLTGNQAAK AGSKRTSKRV DDVDEEASDE EVKGPAKSKK GRKPGGQAKR STVKRKSKGS  360
DEDSDNDDST DDVDHEDDDS ADEDIKNKKR KVTTNKQSKA EMTSKKKIEE GSQNSEQLLE  420
DENNDLGNDC EQLFGIEGNE PESERDDTSD QFFEIDSNDN ENDRSELNEQ LFEIQGNDHE  480
MSGNDDTVID IQNGGSQEKV YPQPVVGLEF DSYDDAYNYY NCYAKELGFA IRVKSSWTKR  540
NSKEKRGAVL CCNCEGFKTM KEANNRKKET RTGCLAMIRL RLVESNRWRV DEVKLDHNHL  600
FDHERAQNSK SHKKMDSGAK RKMEPTLDVE VRTIKLYRTP GTDIVGYGSS NSYEGESNNY  660
VDVFKRLKLK QGDARAIYKY FSRVQLTDPN FFYVYDLSDE GSLRNVFWID SRSRAAYSYF  720
GDVVAFDTTC LSNNYEIPLV AFVGVNHHGQ TILLGCGLLA DETLETYIWL FRAWLTCMSG  780
RPPQTIITTQ CKAIHSAIVE VFPRAHHRLC TSHVVQSILE NMEALQDYEA FQMILSRTVY  840
DSLKVDEFES GWEDMIQRFG IRNHEFLQSL YEDREHWGPA YSKDTCFSGM PDFQNGESTR  900
PFFDGHIHQK TSFEEFFEVY DIVLENKRQE EAHNDVESRD LNPILRTRCY YELQLSKFYT  960
KDVFRKFQHE VAMMSSCFSI TQVHTNGPIV TYMIKEREGE EILRGVRNFE VMYDKAGAEV  1020
RCMCSCFNLN GYLCRHALCI LNYNGVEEIP FQYIFSRWRK DFKRLYVPDL GSNNVDITNP  1080
VQWFDHLYRR AMQVVQEGMI SHDHYMVCWQ AFKESLNKVR LVADKQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3twl_A	1e-145	1	319	1	294	Formamidopyrimidine-DNA glycosylase 1
3twm_A	1e-145	1	319	1	294	Formamidopyrimidine-DNA glycosylase 1
3twm_B	1e-145	1	319	1	294	Formamidopyrimidine-DNA glycosylase 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024180192.1	0.0	protein FAR1-RELATED SEQUENCE 8-like isoform X2
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A2P6RVZ3	0.0	A0A2P6RVZ3_ROSCH; Putative transcription factor FAR family
STRING	XP_004305497.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]